Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb2, OB-fold

Term: IPR014724  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155025 SustainPine v3.0 405
• AutoFact: PREDICTED: similar to Ribosomal protein L8 [Ornithorhynchus anatinus] 9.00054e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.349e-09
C-terminus
sp_v3.0_unigene155204 SustainPine v3.0 494
• AutoFact: PREDICTED: ribosomal protein L8-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBCFE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.425e-08
Internal
sp_v3.0_unigene155411 SustainPine v3.0 292
• AutoFact: Ribosomal protein l n=1 Tax=Haliotis discus discus RepID=B6RB82_HALDI 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.613e-08
Putative N-terminus
sp_v3.0_unigene156503 SustainPine v3.0 335
• AutoFact: Ribosomal protein L8 n=6 Tax=Polyphaga RepID=D1M824_9CUCU 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 1.928e-08
Internal
sp_v3.0_unigene156556 SustainPine v3.0 320
• AutoFact: Ribosomal protein L8 n=6 Tax=Polyphaga RepID=D1M824_9CUCU 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.505e-08
Internal
sp_v3.0_unigene157341 SustainPine v3.0 351
• AutoFact: Ribosomal protein L8 n=2 Tax=Chlamydomonadales RepID=A8IVK1_CHLRE 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.695e-08
Internal
sp_v3.0_unigene157833 SustainPine v3.0 213
• AutoFact: 60S ribosomal protein L8, putative n=4 Tax=Schistosoma RepID=C4QB62_SCHMA 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.661e-07
N-terminus
sp_v3.0_unigene158020 SustainPine v3.0 406
• AutoFact: 60S ribosomal protein L8 n=1 Tax=Lepeophtheirus salmonis RepID=D3PIQ3_9MAXI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.349e-09
Putative C-terminus
sp_v3.0_unigene158376 SustainPine v3.0 232
• AutoFact: ribosomal protein L2 [Brassica juncea] 7.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.478e-08
Putative N-terminus
sp_v3.0_unigene158732 SustainPine v3.0 403
• AutoFact: Ribosomal Proteins L2 domain-containing protein n=6 Tax=Fungi/Metazoa group RepID=E3Q2Y0_COLGM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.922e-08
N-terminus
sp_v3.0_unigene159009 SustainPine v3.0 525
• AutoFact: 60S ribosomal protein L8 n=5 Tax=Neoptera RepID=E2A9Y1_9HYME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 3.068e-08
N-terminus
sp_v3.0_unigene159338 SustainPine v3.0 397
• AutoFact: Ribosomal protein L8 n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UHR9_9EUKA 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 5.817e-09
C-terminus
sp_v3.0_unigene159557 SustainPine v3.0 471
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.501e-07
N-terminus
sp_v3.0_unigene164940 SustainPine v3.0 375
• AutoFact: bHLH transcription factor PTF1 [Zea mays] gb|ABF13333.1| bHLH transcription factor PTF1 [Zea mays] 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 3.949e-20
Internal
sp_v3.0_unigene166954 SustainPine v3.0 232
• AutoFact: 60S ribosomal protein L8 [Triatoma infestans] 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.571e-07
N-terminus
sp_v3.0_unigene167547 SustainPine v3.0 273
• AutoFact: C. briggsae CBR-RPL-2 protein [Caenorhabditis briggsae] emb|CAP26039.1| CBR-RPL-2 protein [Caenorhabditis briggsae AF16] 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene188838 SustainPine v3.0 450
• AutoFact: 60S ribosomal subunit protein L8, putative n=4 Tax=Plasmodium RepID=B3L699_PLAKH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene188920 SustainPine v3.0 479
• AutoFact: ribosomal protein L [Argopecten irradians] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.743e-09
C-terminus
sp_v3.0_unigene188981 SustainPine v3.0 449
• AutoFact: 60S ribosomal protein L2, putative n=9 Tax=Trypanosomatidae RepID=D6XG49_TRYB2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene192275 SustainPine v3.0 821
• AutoFact: L2/L8 (Fragment) n=1 Tax=Suberites domuncula RepID=Q4KTI6_SUBDO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 8.35e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain