Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb2, OB-fold

Term: IPR014724  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene100218 SustainPine v3.0 317
• AutoFact: DNA-directed RNA polymerase n=4 Tax=Solanaceae RepID=Q1L5Z1_SOLLC 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.155e-28
Internal
sp_v3.0_unigene102191 SustainPine v3.0 505
• AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 0.0
• FL-Next: sp=60S ribosomal protein L2, mitochondrial; Oryza sativa subsp. japonica (Rice). Mitochondrion. 0.0
• Sma3: Ribosomal protein L2 7.631e-29
Internal
sp_v3.0_unigene102446 SustainPine v3.0 315
• AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 1.574e-19
Internal
sp_v3.0_unigene106933 SustainPine v3.0 382
• AutoFact: bHLH transcription factor PTF1-like [Oryza sativa Japonica Group] 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 1.252e-19
N-terminus
sp_v3.0_unigene107823 SustainPine v3.0 402
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.371e-20
Internal
sp_v3.0_unigene112810 SustainPine v3.0 331
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 4.0e-27
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.476e-08
Internal
sp_v3.0_unigene114970 SustainPine v3.0 626
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene143064 SustainPine v3.0 605
• AutoFact: 60S ribosomal protein L8-1 n=28 Tax=Spermatophyta RepID=RL81_ARATH 2.0e-31
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: 60S ribosomal protein L8 1.467e-08
Complete
sp_v3.0_unigene143682 SustainPine v3.0 536
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L2 1.237e-07
N-terminus
sp_v3.0_unigene143707 SustainPine v3.0 454
• AutoFact: ribosomal protein L2-like [Solanum tuberosum] 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.296e-08
Putative Complete
sp_v3.0_unigene149411 SustainPine v3.0 320
• AutoFact: Putative ribosomal protein L8e (Fragment) n=1 Tax=Amblyomma variegatum RepID=F0J8L8_AMBVA 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.922e-08
Putative N-terminus
sp_v3.0_unigene150843 SustainPine v3.0 466
• AutoFact: 60S ribosomal protein L8 n=42 Tax=Euteleostomi RepID=RL8_HUMAN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.532e-08
Putative N-terminus
sp_v3.0_unigene150852 SustainPine v3.0 419
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 8.757e-34
Complete
sp_v3.0_unigene150880 SustainPine v3.0 336
• AutoFact: 60S ribosomal protein L2, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RM02_ACACA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L2 1.974e-40
Putative C-terminus
sp_v3.0_unigene151015 SustainPine v3.0 393
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 1.699e-31
Complete
sp_v3.0_unigene152187 SustainPine v3.0 322
• AutoFact: PREDICTED: similar to Ribosomal protein L8 n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CA97 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene154126 SustainPine v3.0 357
• AutoFact: C. briggsae CBR-RPL-2 protein [Caenorhabditis briggsae] emb|CAP26039.1| CBR-RPL-2 protein [Caenorhabditis briggsae AF16] 2.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L8 6.663e-09
C-terminus
sp_v3.0_unigene154287 SustainPine v3.0 436
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 3.21e-32
Complete
sp_v3.0_unigene154754 SustainPine v3.0 436
• AutoFact: PREDICTED: DNA-directed RNA polymerase III B-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF3F5E 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.549e-30
N-terminus
sp_v3.0_unigene154813 SustainPine v3.0 363
• AutoFact: PREDICTED: similar to ribosomal protein L8 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000585096 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L8 2.807e-08
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain