Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase II-binding domain

Term: IPR006903  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene324 SustainPine v3.0 2414
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene1997 SustainPine v3.0 1577
AutoFact: DUF618 multi-domain protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene3321 SustainPine v3.0 605
AutoFact: FAP multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 5.632e-13
coding
sp_v3.0_unigene5872 SustainPine v3.0 1981
AutoFact: contains similarity to human PCF11p homolog (GB:AF046935) [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative C-terminus
sp_v3.0_unigene11818 SustainPine v3.0 172
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 4.0e-17
FL-Next: sp=ENHANCER OF AG-4 protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene12428 SustainPine v3.0 551
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 4.0e-28
FL-Next: sp=ENHANCER OF AG-4 protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene16637 SustainPine v3.0 2601
AutoFact: PCF11P-similar protein 4 [Arabidopsis thaliana] dbj|BAF00997.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82437.1| PCF11P-similar protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene20142 SustainPine v3.0 767
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 0.0
FL-Next: sp=ENHANCER OF AG-4 protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene24158 SustainPine v3.0 825
AutoFact: Tudor/PWWP/MBT domain-containing protein n=3 Tax=Arabidopsis RepID=F4IZM8_ARATH 6.0e-29
FL-Next: sp=HUA2-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene35351 SustainPine v3.0 456
AutoFact: Drf_FH1 multi-domain protein 4.0e-16
Sma3: Glycine-rich protein 1.284e-11
coding
sp_v3.0_unigene37350 SustainPine v3.0 615
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 7.9874e-44
FL-Next: sp=HUA2-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene37448 SustainPine v3.0 725
AutoFact: FAP multi-domain protein 1.0e-22
Sma3: Glycine-rich protein 4.015e-13
coding
sp_v3.0_unigene40700 SustainPine v3.0 582
AutoFact: PCF11P-similar protein 4 n=3 Tax=Arabidopsis RepID=Q0WPF2_ARATH 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
N-terminus
sp_v3.0_unigene47759 SustainPine v3.0 1072
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene52504 SustainPine v3.0 238
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56507 SustainPine v3.0 313
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene73662 SustainPine v3.0 259
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene80312 SustainPine v3.0 118
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene96659 SustainPine v3.0 589
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 0.0
FL-Next: sp=ENHANCER OF AG-4 protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene96786 SustainPine v3.0 509
AutoFact: DUF618 domain containing protein 6.0e-21
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain