Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase/RNase D C-terminal, HRDC domain

Term: IPR002121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene289 SustainPine v3.0 2014
AutoFact: ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs] gb|ABW18526.1| ATP-dependent DNA helicase RecQ [Alkaliphilus oremlandii OhILAs] 1.99965e-42
FL-Next: sp=ATP-dependent DNA helicase Q-like 4B; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene594 SustainPine v3.0 2627
AutoFact: DUF668 multi-domain protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_129, whole genome shotgun sequence 6.271e-06
Complete
sp_v3.0_unigene3805 SustainPine v3.0 2394
AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative DNA helicase RecQsim 7.738e-09
C-terminus
sp_v3.0_unigene3989 SustainPine v3.0 1333
AutoFact: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SDW9_RICCO 0.0
FL-Next: tr=3'-5' exonuclease, putative; Ricinus communis (Castor bean). 0.0
Sma3: RRP6-like protein 3 9.747e-06
C-terminus
sp_v3.0_unigene4203 SustainPine v3.0 5125
AutoFact: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] ref|NP_001117233.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAF79721.1|AC005106_2 T25N20.3 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene4718 SustainPine v3.0 389
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.0e-39
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.767e-11
Internal
sp_v3.0_unigene6632 SustainPine v3.0 2317
AutoFact: DUF668 multi-domain protein 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_129, whole genome shotgun sequence 6.366e-06
Complete
sp_v3.0_unigene12608 SustainPine v3.0 795
AutoFact: ATP-dependent DNA helicase Q-like 3 n=2 Tax=Arabidopsis thaliana RepID=RQL3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 3.136e-14
Internal
sp_v3.0_unigene14157 SustainPine v3.0 3918
AutoFact: Exosome complex exonuclease RRP6 n=3 Tax=Arabidopsis RepID=A9LLI7_ARATH 0.0
FL-Next: tr=Putative nucleolar protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative nucleolar protein 7.335e-08
Complete
sp_v3.0_unigene19219 SustainPine v3.0 409
AutoFact: ATP-dependent DNA helicase [Lyngbya sp. PCC 8106] gb|EAW34238.1| ATP-dependent DNA helicase [Lyngbya sp. PCC 8106] 1.0e-13
FL-Next: sp=ATP-dependent DNA helicase Q-like 4B; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene37536 SustainPine v3.0 1605
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 1.765e-11
C-terminus
sp_v3.0_unigene40332 SustainPine v3.0 465
AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene40706 SustainPine v3.0 979
AutoFact: PREDICTED: similar to Os07g0681600 n=1 Tax=Vitis vinifera RepID=UPI00019834DE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 5.744e-14
Internal
sp_v3.0_unigene41551 SustainPine v3.0 152
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene44363 SustainPine v3.0 997
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene44382 SustainPine v3.0 1524
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene44436 SustainPine v3.0 529
AutoFact: Polymyositis/scleroderma autoantigen 2-like n=1 Tax=Oryza sativa Japonica Group RepID=Q69RB5_ORYSJ 0.0
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene48224 SustainPine v3.0 818
AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene52157 SustainPine v3.0 300
AutoFact: HRDC domain containing protein 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene66089 SustainPine v3.0 373
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Sma3: Nucleolar protein, putative, expressed 8.285e-06
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain