Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase/RNase D C-terminal, HRDC domain

Term: IPR002121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene66184 SustainPine v3.0 153
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene80456 SustainPine v3.0 216
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 1.0e-26
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 0.0
Internal
sp_v3.0_unigene94218 SustainPine v3.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene95253 SustainPine v3.0 452
AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 2.0e-32
FL-Next: tr=Putative uncharacterized protein At2g32420; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: 3'-5' exonuclease, putative 1.19e-07
Internal
sp_v3.0_unigene95466 SustainPine v3.0 515
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene95666 SustainPine v3.0 462
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-29
FL-Next: sp=ATP-dependent DNA helicase Q-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA helicase, putative 6.802e-08
Putative N-terminus
sp_v3.0_unigene96401 SustainPine v3.0 695
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.94273e-44
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.047e-11
N-terminus
sp_v3.0_unigene98663 SustainPine v3.0 455
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104254 SustainPine v3.0 954
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 2.996e-17
Putative C-terminus
sp_v3.0_unigene105801 SustainPine v3.0 411
AutoFact: [L] COG0514 Superfamily II DNA helicase 4.0e-23
FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
Internal
sp_v3.0_unigene107596 SustainPine v3.0 461
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene118295 SustainPine v3.0 270
AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA Helicase 5.61e-08
Internal
sp_v3.0_unigene120981 SustainPine v3.0 369
AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA helicase isolog 1.083e-08
Internal
sp_v3.0_unigene125357 SustainPine v3.0 376
AutoFact: DNA Helicase [Arabidopsis thaliana] 8.0e-14
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene126548 SustainPine v3.0 486
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain