Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Double-stranded RNA-binding

Term: IPR001159  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene74429 SustainPine v3.0 121
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S355_RICCO 2.0e-08
• FL-Next: tr=ATP-dependent RNA helicase A-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene74636 SustainPine v3.0 276
• AutoFact: Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Hydrolase, hydrolyzing O-glycosyl compounds, putative 1.431e-08
Internal
sp_v3.0_unigene74788 SustainPine v3.0 335
• AutoFact: Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 5.15e-21
Internal
sp_v3.0_unigene75016 SustainPine v3.0 347
• AutoFact: Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 4.854e-21
Internal
sp_v3.0_unigene75320 SustainPine v3.0 93
• AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 9.0e-07
• FL-Next: tr=Putative uncharacterized protein F11I4_16; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75581 SustainPine v3.0 179
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 1.0e-16
• FL-Next: sp=Endoribonuclease Dicer homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene76465 SustainPine v3.0 270
• AutoFact: Endoribonuclease Dicer homolog 3a n=1 Tax=Oryza sativa Japonica Group RepID=DCL3A_ORYSJ 1.0e-28
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Ribonuclease III, putative 1.236e-07
Internal
sp_v3.0_unigene77095 SustainPine v3.0 127
• AutoFact: Fructose-bisphosphate aldolase, class I (IC) n=1 Tax=Ostreococcus tauri RepID=Q01GD0_OSTTA 1.0e-11
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
Internal
sp_v3.0_unigene77354 SustainPine v3.0 296
• AutoFact: Unassigned protein
• FL-Next: sp=Putative metallophosphoesterase At3g03305; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene77961 SustainPine v3.0 314
• AutoFact: Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 4.782e-21
Internal
sp_v3.0_unigene78363 SustainPine v3.0 158
• AutoFact: putative helicase [Oryza sativa Japonica Group] 3.0e-11
• FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene78733 SustainPine v3.0 202
• AutoFact: Beta-D-glucan exohydrolase n=1 Tax=Nicotiana tabacum RepID=O82151_TOBAC 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase 2.893e-08
N-terminus
sp_v3.0_unigene79551 SustainPine v3.0 261
• AutoFact: putative helicase [Oryza sativa Japonica Group] 3.99931e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.182e-11
Internal
sp_v3.0_unigene80058 SustainPine v3.0 180
• AutoFact: putative helicase [Oryza sativa Japonica Group] 2.0e-24
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative RNA helicase A 3.02e-11
Internal
sp_v3.0_unigene80303 SustainPine v3.0 175
• AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene80416 SustainPine v3.0 136
• AutoFact: Regulatory-associated protein of TOR 1 n=2 Tax=Oryza sativa Japonica Group RepID=RTOR1_ORYSJ 5.0e-07
• FL-Next: sp=Double-stranded RNA-binding protein 3; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene80822 SustainPine v3.0 195
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 2.0e-07
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene81598 SustainPine v3.0 135
• AutoFact: putative helicase [Oryza sativa Japonica Group] 2.0e-10
• FL-Next: tr=ATP-dependent RNA helicase A-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene95611 SustainPine v3.0 480
• AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 2.0e-06
• FL-Next: sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain