Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Double-stranded RNA-binding

Term: IPR001159  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene7697 SustainPine v3.0 1491
• AutoFact: BcpLH protein [Brassica rapa subsp. pekinensis] gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus] 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7925 SustainPine v3.0 2427
• AutoFact: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SD66_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 7.779e-21
Complete
sp_v3.0_unigene9275 SustainPine v3.0 2183
• AutoFact: dsRNA-binding protein [Brassica oleracea var. gongylodes] emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] 7.00649e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BcpLH protein 7.149e-09
Complete
sp_v3.0_unigene9288 SustainPine v3.0 1973
• AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 8.102e-14
N-terminus
sp_v3.0_unigene9305 SustainPine v3.0 218
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 2.962e-07
Internal
sp_v3.0_unigene9777 SustainPine v3.0 721
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.117e-08
Internal
sp_v3.0_unigene11175 SustainPine v3.0 2636
• AutoFact: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SD66_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 8.329e-21
Complete
sp_v3.0_unigene12658 SustainPine v3.0 1771
• AutoFact: Double-stranded RNA binding protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TW99_PHYPA 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene13576 SustainPine v3.0 380
• AutoFact: putative helicase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.47e-11
Internal
sp_v3.0_unigene13761 SustainPine v3.0 1216
• AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.025e-12
Complete
sp_v3.0_unigene14110 SustainPine v3.0 641
• AutoFact: Exo-1,3-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q75Z80_LILLO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 4.24e-21
C-terminus
sp_v3.0_unigene14151 SustainPine v3.0 2468
• AutoFact: Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Double-stranded RNA binding protein 7.907e-17
Complete
sp_v3.0_unigene15571 SustainPine v3.0 266
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 2.517e-07
N-terminus
sp_v3.0_unigene15851 SustainPine v3.0 631
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RL32_RICCO 0.0
• FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.085e-09
Internal
sp_v3.0_unigene15866 SustainPine v3.0 683
• AutoFact: ATP-dependent RNA helicase, putative 4.0e-29
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.366e-13
Putative N-terminus
sp_v3.0_unigene15979 SustainPine v3.0 798
• AutoFact: Small RNA 2'-O-methyltransferase n=3 Tax=Camelineae RepID=HEN1_ARATH 2.0e-23
• FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative uncharacterized protein T13K14.70 8.285e-06
N-terminus
sp_v3.0_unigene16754 SustainPine v3.0 648
• AutoFact: ATP-dependent RNA helicase A-like protein n=2 Tax=Arabidopsis RepID=Q9FF84_ARATH 4.0e-24
• FL-Next: tr=ATP-dependent RNA helicase A-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
N-terminus
sp_v3.0_unigene17510 SustainPine v3.0 1688
• AutoFact: Exo-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q6UY81_LILLO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 6.769e-21
C-terminus
sp_v3.0_unigene18100 SustainPine v3.0 2358
• AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Double-stranded RNA binding protein 4.665e-12
Complete
sp_v3.0_unigene18707 SustainPine v3.0 685
• AutoFact: RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] ref|NP_001190782.1| RNA methylase HUA ENHANCER 1 [Arabidopsis thaliana] sp|Q9C5Q8.1|HEN1_ARATH RecName: Full=Small RNA 2'-O-methyltransferase; AltName: Full=Protein CORYMBOSA 2; AltName: Full=Protein HUA 2.0e-18
• FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative uncharacterized protein HEN902 5.361e-06
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain