Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Bromodomain, conserved site

Term: IPR018359  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene16051 SustainPine v3.0 3042
AutoFact: [O] COG0464 ATPases of the AAA+ class 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division cycle protein 48 7.867e-13
Complete
sp_v3.0_unigene28647 SustainPine v3.0 972
AutoFact: transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana] sp|Q8LRK9.1|TAF1A_ARATH RecName: Full=Transcription initiation factor TFIID subunit 1-A; Short=AtTAF1a; AltName: Full=TAFII250-A gb|AAM34782.1|AF510669_1 HAF1 [Arabidopsis thaliana] 6.02558e-44
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
C-terminus
sp_v3.0_unigene29272 SustainPine v3.0 729
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 1.359e-29
Putative C-terminus
sp_v3.0_unigene35303 SustainPine v3.0 2610
AutoFact: Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene40178 SustainPine v3.0 381
AutoFact: RecName: Full=Transcription initiation factor TFIID subunit 1; AltName: Full=TAFII250 dbj|BAD37451.1| putative HAC13 protein [Oryza sativa Japonica Group] dbj|BAD37604.1| putative HAC13 protein [Oryza sativa Japonica Group] 2.0e-39
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.688e-09
Internal
sp_v3.0_unigene41867 SustainPine v3.0 236
AutoFact: histone acetyltransferase HAC12 [Arabidopsis thaliana] sp|Q9FWQ5.2|HAC12_ARATH RecName: Full=Histone acetyltransferase HAC12 gb|AEE29487.1| histone acetyltransferase HAC12 [Arabidopsis thaliana] 3.0e-36
FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone acetyltransferase 1.12e-13
Internal
sp_v3.0_unigene46022 SustainPine v3.0 1483
AutoFact: Bromodomain protein n=2 Tax=Populus trichocarpa RepID=B9HH62_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division cycle protein 48 homolog 6.038e-11
Putative C-terminus
sp_v3.0_unigene46130 SustainPine v3.0 561
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal
sp_v3.0_unigene46180 SustainPine v3.0 945
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46697 SustainPine v3.0 2558
AutoFact: bromodomain protein 103 [Zea mays] gb|AAN41251.1| bromodomain protein 103 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain protein 2.005e-10
C-terminus
sp_v3.0_unigene46726 SustainPine v3.0 298
AutoFact: Bromodomain protein n=1 Tax=Populus trichocarpa RepID=B9GQ03_POPTR 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain-containing protein 6.044e-17
Putative C-terminus
sp_v3.0_unigene47636 SustainPine v3.0 227
AutoFact: histon acetyltransferase HAT1 [Arabidopsis thaliana] 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 1.024e-12
Putative C-terminus
sp_v3.0_unigene52753 SustainPine v3.0 170
AutoFact: SWI/SNF class chromatin remodeling complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSB9_PHYPA 1.0e-09
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWI/SNF class chromatin remodeling complex protein 1.427e-08
Internal
sp_v3.0_unigene52879 SustainPine v3.0 431
AutoFact: Bromodomain protein with a AAA ATPase domain n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SIK6_PHYPA 2.0e-31
FL-Next: sp=ATPase family AAA domain-containing protein At1g05910; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Bromodomain protein 3.859e-07
Internal
sp_v3.0_unigene56871 SustainPine v3.0 247
AutoFact: Histone acetyltransferase (Fragment) n=1 Tax=Triticum aestivum RepID=Q7XYD0_WHEAT 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 9.378e-07
Internal
sp_v3.0_unigene57831 SustainPine v3.0 189
AutoFact: Unassigned protein 1.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene62819 SustainPine v3.0 238
AutoFact: Similarity to 26S proteasome subunit 4 n=2 Tax=Arabidopsis thaliana RepID=Q9LIM2_ARATH 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain protein 3.642e-08
Internal
sp_v3.0_unigene63175 SustainPine v3.0 143
AutoFact: DNA-binding bromodomain-containing protein [Arabidopsis thaliana] gb|ABO38785.1| At1g76380 [Arabidopsis thaliana] gb|AEE35832.1| DNA-binding bromodomain-containing protein [Arabidopsis thaliana] 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene66988 SustainPine v3.0 413
AutoFact: cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] dbj|BAC43097.1| putative receptor-like protein kinase 5 RLK5 [Arabidopsis thaliana] gb|AEE84715.1| cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 1.103e-11
Internal
sp_v3.0_unigene68933 SustainPine v3.0 173
AutoFact: Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SJ64_PHYPA 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 2.306e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain