Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: YTH domain

Term: IPR007275  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene129606 SustainPine v3.0 503
AutoFact: DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV 6.02558e-44
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA methyltransferase 7.824e-10
C-terminus
sp_v3.0_unigene149495 SustainPine v3.0 141
AutoFact: YTH domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 6.857e-24
Internal
sp_v3.0_unigene150011 SustainPine v3.0 342
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] gb|AAF19747.1|AC009917_6 Contains similarity to gb|U96448 cleavage and polyadenylation specificity factor 30 kDa from Bos taurus [Arabidopsis thaliana] gb|AAN41459.1| putative c 0.0
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Internal
sp_v3.0_unigene151473 SustainPine v3.0 525
AutoFact: YTH domain family protein 3 [Bos taurus] ref|XP_002692740.1| PREDICTED: YTH domain family, member 3 [Bos taurus] gb|DAA22733.1| YTH domain family, member 3 [Bos taurus] 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 1.031e-19
Putative Complete
sp_v3.0_unigene184011 SustainPine v3.0 564
AutoFact: Putative DNA cytosine methyltransferase Zmet3 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA methyltransferase 6.659e-10
Internal
sp_v3.0_unigene210071 SustainPine v3.0 680
AutoFact: Transcription factor (Fragment) n=1 Tax=Lycoris longituba RepID=D6MKG2_9ASPA 3.0e-39
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain