Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pre-mRNA-splicing factor 38

Term: IPR005037  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene241 SustainPine v3.0 1733
• AutoFact: pre-mRNA processing factor [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mrna splicing factor 4.959e-09
N-terminus
sp_v3.0_unigene1869 SustainPine v3.0 2047
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 snRNP 9.17e-09
Putative Complete
sp_v3.0_unigene2406 SustainPine v3.0 855
• AutoFact: pre-mRNA-splicing factor 38A [Arabidopsis thaliana] gb|AAM64964.1| unknown [Arabidopsis thaliana] gb|AEC09860.1| pre-mRNA-splicing factor 38A [Arabidopsis thaliana] 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g40650 9.26e-06
C-terminus
sp_v3.0_unigene5159 SustainPine v3.0 610
• AutoFact: DUF1777 multi-domain protein 5.0e-14
coding
sp_v3.0_unigene6762 SustainPine v3.0 2672
• AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene8728 SustainPine v3.0 2371
• AutoFact: sarcoplasmic reticulum protein-like protein [Oryza sativa Japonica Group] gb|AAS07364.1| sarcoplasmic reticulum protein (with alternative splicing) [Oryza sativa Japonica Group] gb|ABF99835.1| RNA-binding protein Luc7-like 2, putative, expressed [Oryza sa 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene11287 SustainPine v3.0 2505
• AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snRNP auxiliary factor large subunit B 1.495e-15
Complete
sp_v3.0_unigene13536 SustainPine v3.0 778
• AutoFact: DUF1777 multi-domain protein 7.0e-14
• Sma3: Arginine/serine-rich splicing factor 10 6.823e-06
coding
sp_v3.0_unigene17984 SustainPine v3.0 1189
• AutoFact: LUC7 related protein [Arabidopsis thaliana] gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AED92426.1| LUC7 related protein [Arabidopsis thaliana] 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene21071 SustainPine v3.0 1476
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U1 small nuclear ribonucleoprotein 6.725e-12
Putative Complete
sp_v3.0_unigene79823 SustainPine v3.0 261
• AutoFact: pre-mRNA processing factor 38 [Drosophila melanogaster] gb|AAM50703.1| GM13395p [Drosophila melanogaster] gb|AAF58976.3| pre-mRNA processing factor 38 [Drosophila melanogaster] gb|ACL84434.1| CG30342-PA [synthetic construct] gb|ACL89386.1| CG30342-PA [syn 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene81217 SustainPine v3.0 141
• AutoFact: Unassigned protein 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene85442 SustainPine v3.0 272
• AutoFact: PRP38_assoc multi-domain protein 5.0e-15
• Sma3: ATP-dependent RNA helicase DDX23 7.054e-10
coding
sp_v3.0_unigene95696 SustainPine v3.0 806
putative_coding
sp_v3.0_unigene101432 SustainPine v3.0 665
• AutoFact: pre-mRNA-splicing factor 38A [Arabidopsis thaliana] gb|AAM64964.1| unknown [Arabidopsis thaliana] gb|AEC09860.1| pre-mRNA-splicing factor 38A [Arabidopsis thaliana] 0.0001
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PRP38 6.335e-06
C-terminus
sp_v3.0_unigene112986 SustainPine v3.0 340
• AutoFact: PRP38 n=1 Tax=Medicago truncatula RepID=A2Q158_MEDTR 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g40650 9.26e-06
C-terminus
sp_v3.0_unigene155854 SustainPine v3.0 530
• AutoFact: DUF1777 multi-domain protein 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene162881 SustainPine v3.0 310
• AutoFact: pre-mRNA-splicing factor 38A [Arabidopsis thaliana] gb|AAM64964.1| unknown [Arabidopsis thaliana] gb|AEC09860.1| pre-mRNA-splicing factor 38A [Arabidopsis thaliana] 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g40650 9.26e-06
C-terminus
sp_v3.0_unigene172783 SustainPine v3.0 423
• AutoFact: PRP38_assoc multi-domain protein 2.0e-13
• Sma3: U1 small nuclear ribonucleoprotein 3.42e-10
coding
sp_v3.0_unigene190469 SustainPine v3.0 397
• AutoFact: Pre-mRNA-splicing factor 38A n=1 Tax=Ascaris suum RepID=F1L9R6_ASCSU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mrna splicing factor 8.982e-10
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain