Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: SNF2-related

Term: IPR000330  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene76350 SustainPine v3.0 370
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Aspergillus oryzae RIB40 RepID=Q2U236_ASPOR 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 1.003e-08
Internal
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene77822 SustainPine v3.0 278
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 3.0e-26
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Internal
sp_v3.0_unigene78426 SustainPine v3.0 102
AutoFact: Chromatin remodeling complex subunit n=3 Tax=Populus trichocarpa RepID=B9HM77_POPTR 7.0e-08
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene79197 SustainPine v3.0 441
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2 family DNA-dependent ATPase 2.652e-06
Internal
sp_v3.0_unigene79858 SustainPine v3.0 129
AutoFact: DNA excision repair protein E [Arabidopsis thaliana] gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein [Arabidopsis thaliana] gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana] 8.0e-14
FL-Next: tr=Putative RAD26; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene80738 SustainPine v3.0 229
AutoFact: putative helicase [Arabidopsis thaliana] 5.0e-19
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.125e-06
Internal
sp_v3.0_unigene81260 SustainPine v3.0 253
AutoFact: AP2/ERF domain-containing transcription factor n=2 Tax=Populus RepID=A9PL41_POPTR 1.0e-13
FL-Next: tr=DREB protein; Taxus cuspidata (Japanese yew). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.736e-32
Internal
sp_v3.0_unigene84039 SustainPine v3.0 212
coding
sp_v3.0_unigene87173 SustainPine v3.0 202
Sma3: SNF2 family DNA-dependent ATPase 1.552e-06
coding
sp_v3.0_unigene93612 SustainPine v3.0 1821
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 9.648e-28
Putative Complete
sp_v3.0_unigene94643 SustainPine v3.0 1142
AutoFact: putative chromodomain-helicase-DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene95001 SustainPine v3.0 546
AutoFact: PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus gallus] 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene95009 SustainPine v3.0 1773
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GQA7_POPTR 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene95430 SustainPine v3.0 655
AutoFact: Unassigned protein
FL-Next: sp=Helicase protein MOM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 2.66e-07
Internal
sp_v3.0_unigene95607 SustainPine v3.0 530
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene97146 SustainPine v3.0 448
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 6.346e-17
Internal
sp_v3.0_unigene99105 SustainPine v3.0 529
AutoFact: SNF2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MP52_ARALL 6.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.435e-07
C-terminus
sp_v3.0_unigene99227 SustainPine v3.0 694
AutoFact: DNA excision repair protein E [Arabidopsis thaliana] gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein [Arabidopsis thaliana] gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana] 2.94273e-44
FL-Next: sp=Putative chromatin-remodeling complex ATPase chain; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene99449 SustainPine v3.0 937
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYM3_POPTR 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.22e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain