Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: SNF2-related

Term: IPR000330  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene52479 SustainPine v3.0 414
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKN3_PHYPA 4.0e-21
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52615 SustainPine v3.0 228
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GF82_POPTR 5.0e-05
• FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene52753 SustainPine v3.0 170
• AutoFact: SWI/SNF class chromatin remodeling complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSB9_PHYPA 1.0e-09
• FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWI/SNF class chromatin remodeling complex protein 1.427e-08
Internal
sp_v3.0_unigene54403 SustainPine v3.0 262
• AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 1.0e-09
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene55388 SustainPine v3.0 374
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TE42_PHYPA 5.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene56215 SustainPine v3.0 417
• AutoFact: chromatin remodeling factor18 [Arabidopsis thaliana] gb|AEE32273.1| chromatin remodeling factor18 [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56591 SustainPine v3.0 102
• AutoFact: Putative DNA repair protein n=1 Tax=Ipomoea trifida RepID=Q6JJ38_IPOTF 5.0e-11
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase rad5,16, putative 2.361e-07
Internal
sp_v3.0_unigene57780 SustainPine v3.0 124
• AutoFact: Unassigned protein
• FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene58572 SustainPine v3.0 395
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromatin remodeling complex subunit 1.487e-15
Internal
sp_v3.0_unigene59772 SustainPine v3.0 384
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9H8P5_POPTR 0.0
• FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Internal
sp_v3.0_unigene60521 SustainPine v3.0 171
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: F22O13.8 5.848e-06
Internal
sp_v3.0_unigene60682 SustainPine v3.0 129
• AutoFact: TATA-binding protein-associated factor MOT1, putative n=1 Tax=Ricinus communis RepID=B9SD95_RICCO 2.0e-14
• FL-Next: tr=TATA-binding protein-associated factor MOT1, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene60704 SustainPine v3.0 170
• AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 8.0e-07
• FL-Next: sp=DNA repair and recombination protein RAD54; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: ATP-dependent helicase, putative 7.066e-08
Internal
sp_v3.0_unigene60906 SustainPine v3.0 251
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 5.0e-07
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene61181 SustainPine v3.0 105
• AutoFact: DNA repair protein RAD54-like [Arabidopsis thaliana] 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 super family 4.052e-06
Internal
sp_v3.0_unigene61401 SustainPine v3.0 305
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9H8P5_POPTR 4.0e-17
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene62720 SustainPine v3.0 292
• AutoFact: PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase n=1 Tax=Vitis vinifera RepID=UPI0001983E18 1.0e-27
• FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 6.904e-09
Internal
sp_v3.0_unigene63058 SustainPine v3.0 139
• AutoFact: DNA repair protein RAD54-like [Arabidopsis thaliana] 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene64526 SustainPine v3.0 201
• AutoFact: SNF2 superfamily RAD5 protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S188_PHYPA 2.0e-12
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene64604 SustainPine v3.0 231
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TQZ8_PHYPA 1.0e-20
• FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Chromatin remodeling complex subunit 5.653e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain