Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: SNF2-related

Term: IPR000330  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene118877 SustainPine v3.0 256
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR 3.0e-17
FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene119545 SustainPine v3.0 146
AutoFact: Chromatin remodeling factor18 n=2 Tax=Arabidopsis RepID=F4HWU9_ARATH 1.0e-12
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene121439 SustainPine v3.0 269
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 1.0e-18
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene121930 SustainPine v3.0 350
AutoFact: DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gb|AEE28314 3.0e-37
FL-Next: sp=DNA repair and recombination protein RAD54; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene122674 SustainPine v3.0 472
AutoFact: Chromatin remodeling 38 n=5 Tax=Camelineae RepID=Q9M297_ARATH 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene124543 SustainPine v3.0 167
AutoFact: Defective in RNA-directed DNA methylation 1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L1V4_ARALL 7.0e-12
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene126442 SustainPine v3.0 199
AutoFact: putative chromatin complex subunit A101 [Oryza sativa Japonica Group] 1.0e-15
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWI2/SNF2-like protein 1.041e-12
Internal
sp_v3.0_unigene126873 SustainPine v3.0 723
AutoFact: translocon-associated protein subunit beta [Arabidopsis thaliana] ref|NP_001119221.1| translocon-associated protein subunit beta [Arabidopsis thaliana] ref|NP_001119222.1| translocon-associated protein subunit beta [Arabidopsis thaliana] ref|NP_001119223. 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Translocon-associated protein beta containing protein 1.696e-09
Complete
sp_v3.0_unigene128483 SustainPine v3.0 441
AutoFact: T7A14.1 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9ZVP6_ARATH 4.0e-08
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene129607 SustainPine v3.0 558
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5Q4_POPTR 2.0e-08
FL-Next: tr=Putative uncharacterized protein; subsp. trichocarpa). 0.0
N-terminus
sp_v3.0_unigene130763 SustainPine v3.0 524
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AEC10493.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2P 1.293e-07
Internal
sp_v3.0_unigene131474 SustainPine v3.0 196
unknown
sp_v3.0_unigene131674 SustainPine v3.0 440
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 4.0e-35
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene133034 SustainPine v3.0 465
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 1.062e-24
Internal
sp_v3.0_unigene136696 SustainPine v3.0 381
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S384_PHYPA 4.0e-12
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene137534 SustainPine v3.0 414
AutoFact: RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4II36_ARATH 2.0e-27
FL-Next: tr=RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2/SWI2 family global transcription factor 8.772e-06
Internal
sp_v3.0_unigene148166 SustainPine v3.0 166
AutoFact: putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical protein [Ipomoea trifida] 1.0e-05
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148229 SustainPine v3.0 255
AutoFact: putative helicase [Arabidopsis thaliana] 1.0e-12
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.125e-06
Internal
sp_v3.0_unigene148784 SustainPine v3.0 320
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 1.0e-09
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene148935 SustainPine v3.0 301
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2Y8_PHYPA 1.0e-10
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain