Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Polyadenylate-binding protein/Hyperplastic disc protein

Term: IPR002004  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene199 SustainPine v3.0 2299
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.971e-34
Complete
sp_v3.0_unigene2151 SustainPine v3.0 2937
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.971e-34
Complete
sp_v3.0_unigene6387 SustainPine v3.0 2774
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.314e-22
Complete
sp_v3.0_unigene7292 SustainPine v3.0 2479
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.848e-34
Complete
sp_v3.0_unigene19614 SustainPine v3.0 829
AutoFact: Anthocyanin 5-aromatic acyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SLJ1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: N-hydroxycinnamoyl/benzoyltransferase-like protein 1.874e-11
C-terminus
sp_v3.0_unigene24764 SustainPine v3.0 314
AutoFact: embryonic polyadenylate-binding protein [Xenopus (Silurana) tropicalis] sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein; Short=Embryonic poly(A)-binding protein; Short=ePABP gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.918e-24
C-terminus
sp_v3.0_unigene34197 SustainPine v3.0 2813
AutoFact: poly(A)-binding protein [Daucus carota] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.376e-34
Complete
sp_v3.0_unigene36840 SustainPine v3.0 2677
AutoFact: DEAD-box ATP-dependent RNA helicase 39 n=3 Tax=Oryza sativa RepID=RH39_ORYSJ 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 39; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 39 5.097e-09
Complete
sp_v3.0_unigene62332 SustainPine v3.0 324
AutoFact: Poly(A)-binding protein n=1 Tax=Daucus carota RepID=Q9AT32_DAUCA 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 8.148e-23
N-terminus
sp_v3.0_unigene77773 SustainPine v3.0 401
AutoFact: Polyadenylate-binding protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NF86_COPC7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene140605 SustainPine v3.0 232
AutoFact: pfam00658, PABP, Poly-adenylate binding protein, unique domain 4.0e-12
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene150790 SustainPine v3.0 469
AutoFact: Polyadenlyte binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CFU7_THAPS 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 7.31e-06
Putative C-terminus
sp_v3.0_unigene152491 SustainPine v3.0 392
AutoFact: PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2D0C 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene152622 SustainPine v3.0 431
AutoFact: Polyadenylate-binding protein 1-B n=2 Tax=Phytophthora infestans T30-4 RepID=D0MV08_PHYIT 9.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.972e-13
Putative C-terminus
sp_v3.0_unigene157076 SustainPine v3.0 274
AutoFact: Polyadenylate-binding protein n=6 Tax=Ajellomyces RepID=C0NSS5_AJECG 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene157210 SustainPine v3.0 310
AutoFact: RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3AVQ3_POLPA 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene204746 SustainPine v3.0 395
AutoFact: polyadenylate-binding protein [Cryptococcus neoformans var. neoformans JEC21] ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var. neoformans B-3501A] sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.867e-20
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain