Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Smr protein/MutS2 C-terminal

Term: IPR002625  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene79163 SustainPine v3.0 299
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 5.637e-35
Internal
sp_v3.0_unigene79451 SustainPine v3.0 285
AutoFact: DUF482 domain containing protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene79623 SustainPine v3.0 335
AutoFact: ESC, putative n=1 Tax=Ricinus communis RepID=B9SDZ0_RICCO 8.0e-06
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: ESC, putative 2.242e-15
Internal
sp_v3.0_unigene93833 SustainPine v3.0 801
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene94019 SustainPine v3.0 1119
AutoFact: Auxin response factor-like protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBL7_CUCME 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 2.463e-28
N-terminus
sp_v3.0_unigene94233 SustainPine v3.0 468
AutoFact: AT-hook DNA-binding protein [Catharanthus roseus] 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 7.717e-23
C-terminus
sp_v3.0_unigene94345 SustainPine v3.0 2089
AutoFact: Putative auxin response factor 6/8 n=1 Tax=Ginkgo biloba RepID=E1UHX7_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 8.93328e-42
Putative N-terminus
sp_v3.0_unigene94879 SustainPine v3.0 985
AutoFact: auxin response factor 1 [Arabidopsis thaliana] ref|NP_001031208.1| auxin response factor 1 [Arabidopsis thaliana] sp|Q8L7G0.2|ARFA_ARATH RecName: Full=Auxin response factor 1 gb|AAD39318.1|AC007258_7 auxin response factor 1 [Arabidopsis thaliana] gb|AAC49 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor 1 3.594e-14
Putative N-terminus
sp_v3.0_unigene98613 SustainPine v3.0 409
AutoFact: Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=D4I6L6_ARATH 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 2.028e-08
Internal
sp_v3.0_unigene99766 SustainPine v3.0 638
AutoFact: Auxin response factor n=1 Tax=Physcomitrella patens RepID=D2NUD7_9BRYO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 5.513e-38
Internal
sp_v3.0_unigene99896 SustainPine v3.0 704
AutoFact: auxin response factor 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 4.91099e-41
Internal
sp_v3.0_unigene99897 SustainPine v3.0 772
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46580, chloroplastic; Flags: Precursor dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative chloroplastic RNA-binding protein, with alternative splicing isoforms 2.643e-09
Putative C-terminus
sp_v3.0_unigene101481 SustainPine v3.0 535
AutoFact: Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9RR61_RICCO 1.0e-29
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 1.011e-22
Putative N-terminus
sp_v3.0_unigene104120 SustainPine v3.0 331
AutoFact: plastid transcriptionally active 2 [Arabidopsis thaliana] sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor gb|AAD55291.1| 4.99983e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104719 SustainPine v3.0 568
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R902_RICCO 5.0e-39
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene104874 SustainPine v3.0 571
AutoFact: auxin response factor 6a [Oryza sativa] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 3.448e-25
Putative N-terminus
sp_v3.0_unigene106151 SustainPine v3.0 307
AutoFact: Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9RR61_RICCO 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 4.2039e-45
Internal
sp_v3.0_unigene107549 SustainPine v3.0 322
AutoFact: DNA mismatch repair protein MutS2-like [Arabidopsis thaliana] 3.0e-36
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene111174 SustainPine v3.0 572
AutoFact: DNA binding protein n=1 Tax=Zea mays RepID=B6SJB5_MAIZE 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 4.919e-17
Putative N-terminus
sp_v3.0_unigene114751 SustainPine v3.0 279
AutoFact: DUF296 domain containing protein 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 6.058e-26
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain