Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb1, domain 5

Term: IPR007081  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene118670 SustainPine v3.0 335
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.865e-17
Internal
sp_v3.0_unigene120057 SustainPine v3.0 439
AutoFact: DNA-directed RNA polymerase subunit beta' n=71 Tax=Propionibacterium RepID=RPOC_PROAC 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Halocarpus kirkii. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Internal
sp_v3.0_unigene126750 SustainPine v3.0 892
AutoFact: DUF659 domain containing protein 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene128420 SustainPine v3.0 384
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
Sma3: DNA-directed RNA polymerase 5.695e-18
coding
sp_v3.0_unigene128427 SustainPine v3.0 577
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 1.453e-07
Putative N-terminus
sp_v3.0_unigene129484 SustainPine v3.0 449
AutoFact: DUF1421 multi-domain protein 7.0e-09
Sma3: DNA-directed RNA polymerase 4.786e-19
unknown
sp_v3.0_unigene133065 SustainPine v3.0 487
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene139592 SustainPine v3.0 350
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene141213 SustainPine v3.0 389
AutoFact: DUF659 domain containing protein 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr9 scaffold_90, whole genome shotgun sequence 4.763e-06
Internal
sp_v3.0_unigene141255 SustainPine v3.0 348
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-27
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene148289 SustainPine v3.0 377
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 9.526e-27
Internal
sp_v3.0_unigene148862 SustainPine v3.0 568
AutoFact: DNA-directed RNA polymerase n=3 Tax=Tracheophyta RepID=D8SYZ7_SELML 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene150502 SustainPine v3.0 394
AutoFact: Cuticle_3 multi-domain protein 1.0e-07
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Putative Complete
sp_v3.0_unigene153361 SustainPine v3.0 392
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAT dimerisation domain-containing protein-like 3.556e-07
Putative N-terminus
sp_v3.0_unigene153956 SustainPine v3.0 434
AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE1_HALO1 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene157692 SustainPine v3.0 319
AutoFact: DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZBW5_BRAFL 7.0e-32
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.956e-07
Internal
sp_v3.0_unigene158048 SustainPine v3.0 435
AutoFact: DNA-directed RNA polymerase n=1 Tax=Thauera sp. MZ1T RepID=C4KC58_THASP 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Pinus brutia. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Putative C-terminus
sp_v3.0_unigene159192 SustainPine v3.0 175
AutoFact: DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUG7_CHIPD 6.0e-24
FL-Next: sp=DNA-directed RNA polymerase; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta' 0.0
Internal
sp_v3.0_unigene162932 SustainPine v3.0 333
AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8SQN3_SELML 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 2.96e-18
Internal
sp_v3.0_unigene163706 SustainPine v3.0 328
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 6.0e-17
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.948e-18
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain