Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase Rpb1, domain 3

Term: IPR007066  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene139 SustainPine v3.0 5175
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase; Pseudotsuga menziesii var. menziesii. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 4.286e-38
Complete
sp_v3.0_unigene1055 SustainPine v3.0 2313
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 1.346e-12
Complete
sp_v3.0_unigene2815 SustainPine v3.0 6319
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene2956 SustainPine v3.0 1564
AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.541e-08
Internal
sp_v3.0_unigene16572 SustainPine v3.0 529
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene24355 SustainPine v3.0 426
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 1.0e-09
FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene24913 SustainPine v3.0 646
Sma3: DNA-directed RNA polymerase 1.046e-11
unknown
sp_v3.0_unigene26528 SustainPine v3.0 566
AutoFact: DNA-directed RNA polymerase n=117 Tax=Hypocreomycetidae RepID=E9ELZ9_METAR 1.0e-14
Sma3: DNA-directed RNA polymerase 3.893e-19
coding
sp_v3.0_unigene26543 SustainPine v3.0 435
AutoFact: DNA-directed RNA polymerase n=1 Tax=Blastocystis hominis RepID=D8LZZ3_BLAHO 5.0e-35
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 2.855e-11
Internal
sp_v3.0_unigene34378 SustainPine v3.0 577
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GWX9_POPTR 5.0e-19
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene39929 SustainPine v3.0 164
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 1.0e-18
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.08e-13
Internal
sp_v3.0_unigene40004 SustainPine v3.0 181
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 4.0e-17
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative RNA polymerase A(I) large subunit 1.458e-13
Internal
sp_v3.0_unigene40942 SustainPine v3.0 441
AutoFact: DNA-directed RNA polymerase n=4 Tax=Oryza sativa RepID=B9G500_ORYSJ 2.0e-34
FL-Next: sp=DNA-directed RNA polymerase; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 1.101e-10
Internal
sp_v3.0_unigene43958 SustainPine v3.0 487
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max RepID=Q99368_SOYBN 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 9.971e-22
Internal
sp_v3.0_unigene44586 SustainPine v3.0 424
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene44642 SustainPine v3.0 312
AutoFact: Herpes_BLLF1 multi-domain protein 2.0e-07
Sma3: DNA-directed RNA polymerase 9.64e-20
coding
sp_v3.0_unigene46806 SustainPine v3.0 165
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-15
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.813e-08
Internal
sp_v3.0_unigene48105 SustainPine v3.0 236
AutoFact: RNA polymerase IV largest subunit [Arabidopsis thaliana] 8.0e-14
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene49057 SustainPine v3.0 137
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 3.0e-18
FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: DNA-directed RNA polymerase 4.18e-23
Internal
sp_v3.0_unigene50815 SustainPine v3.0 160
AutoFact: DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group RepID=B9F2S6_ORYSJ 2.0e-11
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase IV subunit 2.274e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain