Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene158117 SustainPine v3.0 350
AutoFact: Ferritin n=3 Tax=Caenorhabditis RepID=Q9TYS3_CAEEL 4.0e-37
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 2.84101e-40
Internal
sp_v3.0_unigene159192 SustainPine v3.0 175
AutoFact: DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUG7_CHIPD 6.0e-24
FL-Next: sp=DNA-directed RNA polymerase; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta' 0.0
Internal
sp_v3.0_unigene162932 SustainPine v3.0 333
AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8SQN3_SELML 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 2.96e-18
Internal
sp_v3.0_unigene163706 SustainPine v3.0 328
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 6.0e-17
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.948e-18
Internal
sp_v3.0_unigene168179 SustainPine v3.0 295
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 2.0e-32
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase II largest subunit 6.855e-36
Internal
sp_v3.0_unigene171344 SustainPine v3.0 405
AutoFact: Amelogenin multi-domain protein 2.0e-13
coding
sp_v3.0_unigene173563 SustainPine v3.0 343
AutoFact: Cell wall-anchored protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B873_9BACI 2.0e-06
Sma3: DNA-directed RNA polymerase 1.046e-11
coding
sp_v3.0_unigene183370 SustainPine v3.0 523
AutoFact: Ferritin n=1 Tax=Tegillarca granosa RepID=D3JCC5_TEGGR 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
C-terminus
sp_v3.0_unigene183422 SustainPine v3.0 522
AutoFact: Ferritin n=1 Tax=Sinonovacula constricta RepID=D2JIV0_SINCO 5.60519e-45
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
C-terminus
sp_v3.0_unigene191203 SustainPine v3.0 507
AutoFact: Amelogenin multi-domain protein 9.0e-13
Sma3: DNA-directed RNA polymerase 5.174e-07
coding
sp_v3.0_unigene191357 SustainPine v3.0 346
AutoFact: Collagen multi-domain protein 5.0e-12
Sma3: DNA-directed RNA polymerase 5.889e-14
coding
sp_v3.0_unigene191583 SustainPine v3.0 395
AutoFact: Ferritin-1, chloroplastic n=2 Tax=Brassica RepID=FRI1_BRANA 2.0e-27
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene205008 SustainPine v3.0 508
AutoFact: Ferritin (Fragment) n=2 Tax=Branchiostoma RepID=Q86LZ3_BRALA 1.4013e-45
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain