Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene117075 SustainPine v3.0 356
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8T5S9_SELML 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin-activating enzyme E1 0.0
N-terminus
sp_v3.0_unigene118670 SustainPine v3.0 335
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 4.865e-17
Internal
sp_v3.0_unigene119775 SustainPine v3.0 383
AutoFact: DNA-directed RNA polymerase n=4 Tax=Agaricomycetidae RepID=D8PLU0_SCHCM 1.0e-25
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene120057 SustainPine v3.0 439
AutoFact: DNA-directed RNA polymerase subunit beta' n=71 Tax=Propionibacterium RepID=RPOC_PROAC 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Halocarpus kirkii. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Internal
sp_v3.0_unigene128420 SustainPine v3.0 384
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
Sma3: DNA-directed RNA polymerase 5.695e-18
coding
sp_v3.0_unigene129112 SustainPine v3.0 543
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RC12_RICCO 1.0e-20
FL-Next: sp=DNA-directed RNA polymerase D subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene129484 SustainPine v3.0 449
AutoFact: DUF1421 multi-domain protein 7.0e-09
Sma3: DNA-directed RNA polymerase 4.786e-19
unknown
sp_v3.0_unigene130209 SustainPine v3.0 668
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8T5S9_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin-activating enzyme E1 0.0
N-terminus
sp_v3.0_unigene138723 SustainPine v3.0 321
AutoFact: Ubiquitin-activating enzyme E1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJT2_VITVI 9.0e-35
FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
Sma3: Ubiquitin-activating enzyme E1 1.376e-39
Internal
sp_v3.0_unigene139592 SustainPine v3.0 350
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene141255 SustainPine v3.0 348
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-27
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene148289 SustainPine v3.0 377
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 9.526e-27
Internal
sp_v3.0_unigene148862 SustainPine v3.0 568
AutoFact: DNA-directed RNA polymerase n=3 Tax=Tracheophyta RepID=D8SYZ7_SELML 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene150502 SustainPine v3.0 394
AutoFact: Cuticle_3 multi-domain protein 1.0e-07
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Putative Complete
sp_v3.0_unigene153956 SustainPine v3.0 434
AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE1_HALO1 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene156144 SustainPine v3.0 258
AutoFact: Ferritin n=1 Tax=Crassostrea gigas RepID=Q7YZR8_CRAGI 2.0e-26
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene156531 SustainPine v3.0 280
AutoFact: Ferritin n=1 Tax=Crassostrea gigas RepID=Q7YZR8_CRAGI 1.0e-21
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene157114 SustainPine v3.0 378
AutoFact: Ferritin n=5 Tax=Hydra RepID=A0S5U1_HYDVU 1.0e-36
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene157692 SustainPine v3.0 319
AutoFact: DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZBW5_BRAFL 7.0e-32
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.956e-07
Internal
sp_v3.0_unigene158048 SustainPine v3.0 435
AutoFact: DNA-directed RNA polymerase n=1 Tax=Thauera sp. MZ1T RepID=C4KC58_THASP 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Pinus brutia. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain