Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene68281 SustainPine v3.0 198
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 1.0e-20
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene69142 SustainPine v3.0 247
AutoFact: Ubiquitin-activating enzyme E1 n=1 Tax=Ricinus communis RepID=B9SKZ1_RICCO 1.0e-20
FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
Sma3: Ubiquitin-activating enzyme E1 3.72e-36
Internal
sp_v3.0_unigene69536 SustainPine v3.0 184
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 3.0e-20
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 3.761e-22
Internal
sp_v3.0_unigene73982 SustainPine v3.0 496
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Marasmius alliaceus RepID=Q5I2D9_9AGAR 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Nageia nagi. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene77361 SustainPine v3.0 522
AutoFact: Ubiquitin activating enzyme n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=D6RMU3_COPC7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin-activating enzyme E1 0.0
Internal
sp_v3.0_unigene81013 SustainPine v3.0 255
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 1.0e-22
FL-Next: sp=Ubiquitin-activating enzyme E1 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin-activating enzyme E1 2.031e-32
Internal
sp_v3.0_unigene85223 SustainPine v3.0 352
AutoFact: Caudal_act multi-domain protein 5.0e-06
Sma3: DNA-directed RNA polymerase 6.888e-19
coding
sp_v3.0_unigene85291 SustainPine v3.0 323
AutoFact: Herpes_BLLF1 multi-domain protein 6.0e-09
Sma3: DNA-directed RNA polymerase 6.813e-20
coding
sp_v3.0_unigene85910 SustainPine v3.0 233
AutoFact: DUF605 multi-domain protein 2.0e-06
Sma3: DNA-directed RNA polymerase 1.97e-19
coding
sp_v3.0_unigene86121 SustainPine v3.0 334
AutoFact: DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ 0.0001
coding
sp_v3.0_unigene96158 SustainPine v3.0 416
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Agathis australis (Kauri) (Dammara australis). Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 5.497e-32
Internal
sp_v3.0_unigene97456 SustainPine v3.0 588
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 5.0e-25
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene105032 SustainPine v3.0 422
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.94e-11
Internal
sp_v3.0_unigene108173 SustainPine v3.0 201
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 4.0e-14
FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene110928 SustainPine v3.0 225
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA 2.0e-22
FL-Next: sp=Ubiquitin-activating enzyme E1 3; Triticum aestivum (Wheat). 0.0
Sma3: Ubiquitin-activating enzyme E1 0.0
Internal
sp_v3.0_unigene114277 SustainPine v3.0 382
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 1.99993e-41
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.086e-10
Putative N-terminus
sp_v3.0_unigene114847 SustainPine v3.0 380
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus taiwanensis. Plastid; Chloroplast. 0.0
Sma3: DNA-directed RNA polymerase 1.032e-34
Internal
sp_v3.0_unigene115291 SustainPine v3.0 239
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 5.0e-31
FL-Next: sp=DNA-directed RNA polymerase; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: DNA-directed RNA polymerase 2.481e-22
Internal
sp_v3.0_unigene115818 SustainPine v3.0 376
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin-activating enzyme E1 0.0
Internal
sp_v3.0_unigene116171 SustainPine v3.0 316
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: DNA-directed RNA polymerase 4.546e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain