Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene44642 SustainPine v3.0 312
• AutoFact: Herpes_BLLF1 multi-domain protein 2.0e-07
• Sma3: DNA-directed RNA polymerase 9.64e-20
coding
sp_v3.0_unigene46806 SustainPine v3.0 165
• AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-15
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 3.813e-08
Internal
sp_v3.0_unigene48105 SustainPine v3.0 236
• AutoFact: RNA polymerase IV largest subunit [Arabidopsis thaliana] 8.0e-14
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48547 SustainPine v3.0 447
• AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin-activating enzyme E1 0.0
N-terminus
sp_v3.0_unigene49057 SustainPine v3.0 137
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 3.0e-18
• FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: DNA-directed RNA polymerase 4.18e-23
Internal
sp_v3.0_unigene50337 SustainPine v3.0 342
• AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 6.0e-39
• FL-Next: sp=Ubiquitin-activating enzyme E1 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin-activating enzyme E1 6.742e-36
Internal
sp_v3.0_unigene50815 SustainPine v3.0 160
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group RepID=B9F2S6_ORYSJ 2.0e-11
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA polymerase IV subunit 2.274e-09
Internal
sp_v3.0_unigene55088 SustainPine v3.0 220
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 1.0e-14
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA polymerase IV subunit 2.438e-09
Internal
sp_v3.0_unigene55939 SustainPine v3.0 186
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 6.0e-22
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene56466 SustainPine v3.0 270
• AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 2.0e-34
• FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
• Sma3: Ubiquitin-activating enzyme E1 0.0
Internal
sp_v3.0_unigene57245 SustainPine v3.0 129
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 2.0e-08
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 3.347e-27
Internal
sp_v3.0_unigene57508 SustainPine v3.0 322
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 2.0e-26
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene58858 SustainPine v3.0 316
• AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 6.0e-35
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.134e-21
Internal
sp_v3.0_unigene62073 SustainPine v3.0 165
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Pinus koraiensis RepID=A4QM13_PINKO 1.0e-05
• FL-Next: sp=DNA-directed RNA polymerase; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
N-terminus
sp_v3.0_unigene63585 SustainPine v3.0 209
• AutoFact: DNA-directed RNA polymerase (Fragment) n=3 Tax=Gnetopsida RepID=Q2TUN5_EPHVI 2.0e-21
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.449e-23
Internal
sp_v3.0_unigene64827 SustainPine v3.0 156
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 6.0e-22
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.799e-28
Internal
sp_v3.0_unigene65030 SustainPine v3.0 130
• AutoFact: Ubiquitin-activating enzyme E1 n=1 Tax=Sorghum bicolor RepID=C5WNH5_SORBI 2.0e-10
• FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
• Sma3: Ubiquitin-activating enzyme E1 1.091e-25
Internal
sp_v3.0_unigene66557 SustainPine v3.0 442
• AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: F-box and wd40 domain protein, putative 1.474e-09
C-terminus
sp_v3.0_unigene67371 SustainPine v3.0 377
• AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 3.0e-32
• FL-Next: sp=Ubiquitin-activating enzyme E1 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin-activating enzyme E1 0.0
Internal
sp_v3.0_unigene67549 SustainPine v3.0 304
• AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8T5S9_SELML 8.0e-32
• FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
• Sma3: Ubiquitin-activating enzyme E1 4.227e-36
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain