Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Domain of unknown function DUF834

Term: IPR008552  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene69654 SustainPine v3.0 195
• AutoFact: Putative polyprotein n=2 Tax=Oryza sativa Japonica Group RepID=Q60DI2_ORYSJ 4.0e-15
• FL-Next: tr=Putative gag-pol polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.626e-27
Internal
sp_v3.0_unigene69847 SustainPine v3.0 385
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Brassica napus RepID=Q8W452_BRANA 3.0e-33
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.343e-29
C-terminus
sp_v3.0_unigene69953 SustainPine v3.0 455
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 6.0e-29
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene70015 SustainPine v3.0 396
• AutoFact: Gag-pol polyprotein n=1 Tax=Solanum lycopersicum RepID=E6Y5Q2_SOLLC 5.0e-37
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 4.547e-27
Putative Complete
sp_v3.0_unigene70033 SustainPine v3.0 424
• AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA48_ASPOF 6.0e-36
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.873e-10
N-terminus
sp_v3.0_unigene70138 SustainPine v3.0 377
• AutoFact: Polyprotein n=1 Tax=Oryza australiensis RepID=Q0ZLH4_9ORYZ 1.0e-28
• FL-Next: tr=Polyprotein; Oryza australiensis. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene70166 SustainPine v3.0 385
• AutoFact: rve domain containing protein 2.0e-12
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene70799 SustainPine v3.0 363
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 6.0e-19
• FL-Next: tr=Putative retrotransposon protein, identical; Solanum demissum (Wild potato). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.204e-25
Internal
sp_v3.0_unigene70862 SustainPine v3.0 366
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 5.0e-24
• FL-Next: tr=Putative uncharacterized protein orf215; Nicotiana tabacum (Common tobacco). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.628e-21
Internal
sp_v3.0_unigene71005 SustainPine v3.0 348
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 8.0e-27
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene71011 SustainPine v3.0 276
• AutoFact: retrotransposon protein [Beta vulgaris] 4.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene71351 SustainPine v3.0 317
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene71399 SustainPine v3.0 368
• AutoFact: OSIGBa0132I10.1 protein n=2 Tax=Oryza sativa RepID=Q01N00_ORYSA 2.0e-25
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene71485 SustainPine v3.0 339
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.475e-27
Putative N-terminus
sp_v3.0_unigene71596 SustainPine v3.0 356
• AutoFact: Putative retroelement n=2 Tax=Oryza sativa RepID=Q8H8K3_ORYSJ 4.0e-39
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.487e-38
C-terminus
sp_v3.0_unigene71772 SustainPine v3.0 406
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.53899e-40
Putative Complete
sp_v3.0_unigene71795 SustainPine v3.0 281
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 5.0e-24
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.421e-40
Putative N-terminus
sp_v3.0_unigene71899 SustainPine v3.0 368
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.166e-30
Internal
sp_v3.0_unigene72045 SustainPine v3.0 328
• AutoFact: Putative 22 kDa kafirin cluster; Ty3-Gypsy type n=2 Tax=Oryza sativa RepID=Q7G6A5_ORYSJ 6.0e-23
• FL-Next: tr=Putative 22 kDa kafirin cluster; Ty3-Gypsy type; Oryza sativa (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.81153e-42
Internal
sp_v3.0_unigene72537 SustainPine v3.0 167
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZE5_ORYSJ 6.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain