Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Extensin repeat

Term: IPR006706  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene16 SustainPine v3.0 3247
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Glycine-rich protein 1.501e-14
Complete
sp_v3.0_unigene23 SustainPine v3.0 1758
AutoFact: flocculin [Trichomonas vaginalis G3] gb|EAX95321.1| flocculin, putative [Trichomonas vaginalis G3] 4.0e-10
FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
Sma3: Extensin 7.927e-30
C-terminus
sp_v3.0_unigene1879 SustainPine v3.0 3620
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TEH2_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin 3.825e-13
Complete
sp_v3.0_unigene2409 SustainPine v3.0 1114
AutoFact: Drf_FH1 multi-domain protein 2.0e-18
Sma3: Extensin 3.312e-31
coding
sp_v3.0_unigene2801 SustainPine v3.0 524
AutoFact: Extensin_2 multi-domain protein 7.0e-21
Sma3: Extensin 0.0
coding
sp_v3.0_unigene2815 SustainPine v3.0 6319
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene3130 SustainPine v3.0 1552
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Extensin-like protein 5.36e-31
N-terminus
sp_v3.0_unigene3321 SustainPine v3.0 605
AutoFact: FAP multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 5.632e-13
coding
sp_v3.0_unigene4813 SustainPine v3.0 878
AutoFact: Atrophin-1 multi-domain protein 2.0e-16
Sma3: Extensin-like protein 5.958e-12
coding
sp_v3.0_unigene5154 SustainPine v3.0 377
AutoFact: Drf_FH1 multi-domain protein 8.0e-19
Sma3: Extensin 7.246e-34
coding
sp_v3.0_unigene6403 SustainPine v3.0 1468
AutoFact: Leucine-rich repeat extensin-like protein 3 n=1 Tax=Arabidopsis thaliana RepID=LRX3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 4.04e-31
Putative N-terminus
sp_v3.0_unigene9877 SustainPine v3.0 844
AutoFact: Extensin_2 multi-domain protein 4.0e-24
Sma3: Extensin 0.0
coding
sp_v3.0_unigene10451 SustainPine v3.0 825
AutoFact: Leucine-rich repeat extensin-like protein 3 n=1 Tax=Arabidopsis thaliana RepID=LRX3_ARATH 0.0
FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Extensin-like protein 6.093e-31
Internal
sp_v3.0_unigene11677 SustainPine v3.0 1829
AutoFact: leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana] sp|Q9T0K5.1|LRX3_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 3; Short=AtLRX3; Short=LRR/EXTENSIN3; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 5.595e-31
Internal
sp_v3.0_unigene12676 SustainPine v3.0 698
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 6.0e-29
FL-Next: sp=Leucine-rich repeat extensin-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Extensin-like protein 6.964e-16
N-terminus
sp_v3.0_unigene13894 SustainPine v3.0 800
AutoFact: Tyrosine-rich hydroxyproline-rich glycoprotein (Fragment) n=1 Tax=Petroselinum crispum RepID=Q40793_PETCR 4.0e-25
FL-Next: tr=Putative uncharacterized protein Sb03g042800; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: Extensin 0.0
Putative N-terminus
sp_v3.0_unigene14119 SustainPine v3.0 364
AutoFact: Extensin_2 multi-domain protein 2.0e-21
Sma3: Extensin 0.0
coding
sp_v3.0_unigene16995 SustainPine v3.0 2025
AutoFact: Atrophin-1 multi-domain protein 6.0e-39
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Extensin 6.007e-36
C-terminus
sp_v3.0_unigene17285 SustainPine v3.0 1192
AutoFact: DUF1421 multi-domain protein 2.0e-13
unknown
sp_v3.0_unigene17301 SustainPine v3.0 1416
AutoFact: DUF1421 multi-domain protein 2.0e-15
Sma3: Repetitive proline-rich cell wall protein 1 8.439e-09
putative_coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain