Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene26923 SustainPine v3.0 917
• AutoFact: uncharacterized protein [Arabidopsis thaliana] emb|CAB62355.1| putative protein [Arabidopsis thaliana] gb|AEE78441.1| uncharacterized protein [Arabidopsis thaliana] 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Emb|CAB62355.1 3.856e-08
Complete
sp_v3.0_unigene27218 SustainPine v3.0 392
• AutoFact: 40S ribosomal protein S19-1 n=8 Tax=Arabidopsis RepID=RS191_ARATH 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 1.268e-13
C-terminus
sp_v3.0_unigene27663 SustainPine v3.0 1756
• AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene27830 SustainPine v3.0 1261
• AutoFact: Xyloglucan endotransglucosylase/hydrolase protein A, putative n=1 Tax=Ricinus communis RepID=B9S7W0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 1.07199e-41
Complete
sp_v3.0_unigene27911 SustainPine v3.0 4761
• AutoFact: RecName: Full=Serine/threonine-protein kinase Nek5; AltName: Full=NimA-related protein kinase 5; AltName: Full=OsNek5 dbj|BAB63817.1| putative LSTK-1-like kinase [Oryza sativa Japonica Group] dbj|BAC01197.1| putative LSTK-1-like kinase [Oryza sativa Japon 0.0
• FL-Next: sp=Serine/threonine-protein kinase Nek5; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Serine/threonine-protein kinase Nek4 3.12e-11
Complete
sp_v3.0_unigene27918 SustainPine v3.0 474
• AutoFact: PLAC8 domain containing protein 8.00141e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: PGPS/D12 1.109e-19
N-terminus
sp_v3.0_unigene27945 SustainPine v3.0 777
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 9.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene28219 SustainPine v3.0 1154
• AutoFact: putative cucumisin-like serine protease [Oryza sativa Japonica Group] gb|AAP53584.1| Subtilisin N-terminal Region family protein, expressed [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xylem serine proteinase 1, putative 1.4013e-45
C-terminus
sp_v3.0_unigene28316 SustainPine v3.0 938
• AutoFact: Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Laccase 0.0
C-terminus
sp_v3.0_unigene28339 SustainPine v3.0 958
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_89.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SMT7_VITVI 0.0
• FL-Next: sp=Reticuline oxidase-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Reticuline oxidase, putative 3.063e-30
Putative C-terminus
sp_v3.0_unigene28534 SustainPine v3.0 616
• AutoFact: Laccase n=1 Tax=Pinus taeda RepID=Q9AUI0_PINTA 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Laccase 7.00649e-45
C-terminus
sp_v3.0_unigene28577 SustainPine v3.0 740
• AutoFact: Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Oryza sativa RepID=B9GAM6_ORYSJ 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 1.067e-07
Internal
sp_v3.0_unigene28648 SustainPine v3.0 534
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene28658 SustainPine v3.0 2149
• AutoFact: pfam00010, HLH, Helix-loop-helix DNA-binding domain 2.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: At4g36060-like protein 3.211e-07
Complete
sp_v3.0_unigene28683 SustainPine v3.0 580
• AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT family dimerisation domain containing protein 3.399e-08
Putative C-terminus
sp_v3.0_unigene28886 SustainPine v3.0 449
• AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AAB60741.1| F21M12.27 gene product [Arabidopsis thaliana] gb|AEE28510.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lyase, putative 1.344e-27
Putative N-terminus
sp_v3.0_unigene29208 SustainPine v3.0 403
• AutoFact: Laccase n=3 Tax=Pinus RepID=F4MKL7_PINPS 9.99995e-41
• FL-Next: tr=Laccase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Laccase 1.4013e-45
C-terminus
sp_v3.0_unigene29248 SustainPine v3.0 530
• AutoFact: lipase-3 domain-containing protein [Arabidopsis thaliana] gb|AAG51101.1|AC025295_9 lipase, putative [Arabidopsis thaliana] gb|AEE31210.1| lipase-3 domain-containing protein [Arabidopsis thaliana] 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Triacylglycerol lipase like protein 3.433e-08
Internal
sp_v3.0_unigene29254 SustainPine v3.0 1705
• AutoFact: calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] ref|NP_974977.1| calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] sp|Q941L3.2|BON1_ARATH RecName: Full=Protein BONZAI 1; AltName: Full=COPIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine-like protein 3.591e-08
N-terminus
sp_v3.0_unigene29378 SustainPine v3.0 2280
• AutoFact: Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SC17_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lipid binding protein, putative 6.462e-09
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain