Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene24578 SustainPine v3.0 447
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 7.0e-40
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.873e-17
C-terminus
sp_v3.0_unigene24638 SustainPine v3.0 1991
• AutoFact: beta-ketoacyl-ACP synthase I [Jatropha curcas] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-ketoacyl-ACP synthase II 5.574e-17
Complete
sp_v3.0_unigene24762 SustainPine v3.0 638
• AutoFact: Laccase-like multicopper oxidase 130 (Fragment) n=1 Tax=Ginkgo biloba RepID=Q693D1_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Laccase 0.0
Internal
sp_v3.0_unigene24771 SustainPine v3.0 560
• AutoFact: Putative ribosomal protein S19 n=1 Tax=Taeniopygia guttata RepID=B5FYU2_TAEGU 4.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 9.511e-14
Complete
sp_v3.0_unigene24791 SustainPine v3.0 957
• AutoFact: AMP-binding protein n=1 Tax=Brassica napus RepID=Q96337_BRANA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyl-CoA synthetase-like protein 4.061e-09
C-terminus
sp_v3.0_unigene25004 SustainPine v3.0 296
• AutoFact: F20P5.25 protein n=1 Tax=Arabidopsis thaliana RepID=O04543_ARATH 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: F20P5.25 protein 4.386e-06
N-terminus
sp_v3.0_unigene25150 SustainPine v3.0 446
• AutoFact: Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Laccase, putative 0.0
Internal
sp_v3.0_unigene25173 SustainPine v3.0 1042
• AutoFact: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RDE1_RICCO 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LOB domain-containing protein, putative 1.334e-36
C-terminus
sp_v3.0_unigene25220 SustainPine v3.0 4244
• AutoFact: Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA 0.0
• FL-Next: tr=Sucrose synthase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Sucrose synthase 0.0
Complete
sp_v3.0_unigene25224 SustainPine v3.0 1176
• AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
• FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
• Sma3: 5'->3' exoribonuclease, putative 8.808e-16
N-terminus
sp_v3.0_unigene25234 SustainPine v3.0 586
• AutoFact: Probable xyloglucan endotransglucosylase/hydrolase protein 5 n=3 Tax=Arabidopsis RepID=XTH5_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 4.884e-39
Putative C-terminus
sp_v3.0_unigene25256 SustainPine v3.0 1872
• AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 5.0e-40
• FL-Next: sp=Nuclear transcription factor Y subunit A-7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nuclear transcription factor Y subunit A-3 1.432e-16
Complete
sp_v3.0_unigene25301 SustainPine v3.0 421
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene25778 SustainPine v3.0 526
• AutoFact: RNase L inhibitor-like protein n=1 Tax=Ectocarpus siliculosus RepID=D8LC25_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNase L inhibitor-like protein 5.026e-11
C-terminus
sp_v3.0_unigene25791 SustainPine v3.0 531
• AutoFact: ribosomal protein S19 [Homo sapiens] 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 3.212e-17
Putative Complete
sp_v3.0_unigene25841 SustainPine v3.0 644
• AutoFact: RNase L inhibitor-like protein n=1 Tax=Ectocarpus siliculosus RepID=D8LC25_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNase L inhibitor-like protein 5.026e-11
C-terminus
sp_v3.0_unigene26023 SustainPine v3.0 983
• AutoFact: DUF659 domain containing protein 9.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene26832 SustainPine v3.0 1524
• AutoFact: Cinnamoyl-CoA reductase n=3 Tax=Pinaceae RepID=B3VKE9_9CONI 0.0
• FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cinnamoyl-CoA reductase 0.0
Putative Complete
sp_v3.0_unigene26840 SustainPine v3.0 3030
• AutoFact: Protein phosphatase 2C n=1 Tax=Zea mays RepID=B6U2F2_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein phosphatase 2c, putative 1.151e-08
Complete
sp_v3.0_unigene26911 SustainPine v3.0 543
• AutoFact: Acetone-cyanohydrin lyase n=3 Tax=Arabidopsis RepID=O80476_ARATH 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_527, whole genome shotgun sequence 4.467e-16
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain