Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene22854 SustainPine v3.0 3856
• AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene22980 SustainPine v3.0 1287
• AutoFact: Xyloglucan endo-transglycosylase [Vitis labrusca x Vitis vinifera] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 7.213e-15
Complete
sp_v3.0_unigene23025 SustainPine v3.0 3264
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 3.086e-07
Putative Complete
sp_v3.0_unigene23078 SustainPine v3.0 1220
• AutoFact: Subtilisin-like serine protease n=5 Tax=Arabidopsis RepID=Q8LGA0_ARATH 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cucumisin, putative 8.902e-12
Internal
sp_v3.0_unigene23143 SustainPine v3.0 1069
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene23163 SustainPine v3.0 520
• AutoFact: 40S ribosomal protein S19S n=1 Tax=Trichinella spiralis RepID=E5SIS9_TRISP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 1.018e-13
Complete
sp_v3.0_unigene23368 SustainPine v3.0 3773
• AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 3.067e-29
Putative Complete
sp_v3.0_unigene23400 SustainPine v3.0 2209
• AutoFact: PREDICTED: similar to Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Vitis vinifera RepID=UPI0001982DBD 0.0
• FL-Next: sp=Bifunctional dihydrofolate reductase-thymidylate synthase; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Thymidylate synthase 7.791e-33
Complete
sp_v3.0_unigene23452 SustainPine v3.0 497
• AutoFact: 40S ribosomal protein S19 n=3 Tax=Branchiostoma RepID=RS19_BRABE 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19-like 2.071e-08
Complete
sp_v3.0_unigene23530 SustainPine v3.0 1451
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 2.245e-07
Putative Complete
sp_v3.0_unigene23581 SustainPine v3.0 1001
• AutoFact: Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Flavonoid 3',5'-hydroxylase 5.663e-27
C-terminus
sp_v3.0_unigene23703 SustainPine v3.0 360
• AutoFact: Lyase, putative n=1 Tax=Ricinus communis RepID=B9SMY7_RICCO 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lyase, putative 1.183e-27
Putative N-terminus
sp_v3.0_unigene23900 SustainPine v3.0 3107
• AutoFact: Subtilisin-like protease n=2 Tax=Arabidopsis RepID=SUBL_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xylem serine proteinase 1, putative 0.0
Complete
sp_v3.0_unigene24022 SustainPine v3.0 820
• AutoFact: CKS1 protein n=3 Tax=Populus RepID=Q8GZU5_9ROSI 3.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cyclin-dependent kinases regulatory subunit 1 7.93e-09
Putative Complete
sp_v3.0_unigene24084 SustainPine v3.0 522
• AutoFact: 40S ribosomal protein S19-1 n=8 Tax=Arabidopsis RepID=RS191_ARATH 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 1.041e-13
Complete
sp_v3.0_unigene24118 SustainPine v3.0 721
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 8.0e-27
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.595e-07
Putative C-terminus
sp_v3.0_unigene24155 SustainPine v3.0 1262
• AutoFact: Pollen major allergen No.121 isoform 2 n=1 Tax=Cryptomeria japonica RepID=Q588B9_CRYJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xyloglucan endotransglycosylase 5.00824e-42
Complete
sp_v3.0_unigene24325 SustainPine v3.0 1171
• AutoFact: DUF150 domain containing protein 9.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene24410 SustainPine v3.0 1043
• AutoFact: Aquaporin-like protein n=1 Tax=Picea abies RepID=O65860_PICAB 0.0
• FL-Next: tr=Aquaporin-like protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Aquaporin, MIP family, TIP subfamily 3.89561e-42
Complete
sp_v3.0_unigene24565 SustainPine v3.0 514
• AutoFact: 40S ribosomal protein S19-1 n=8 Tax=Arabidopsis RepID=RS191_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S19 3.559e-17
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain