Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, H2C2-type, histone UAS binding

Term: IPR015416  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene63347 SustainPine v3.0 394
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Pol protein integrase region 8.40779e-45
Internal
sp_v3.0_unigene63470 SustainPine v3.0 357
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 9.0e-39
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.379e-36
Putative C-terminus
sp_v3.0_unigene64059 SustainPine v3.0 142
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 2.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 2.041e-12
Internal
sp_v3.0_unigene64082 SustainPine v3.0 264
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 3.0e-38
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene64290 SustainPine v3.0 206
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Reverse transcriptase 5.134e-16
Internal
sp_v3.0_unigene64389 SustainPine v3.0 228
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60ET2_ORYSJ 2.0e-15
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 6.391e-11
Putative C-terminus
sp_v3.0_unigene64395 SustainPine v3.0 182
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Ginkgo biloba RepID=Q9ARL0_GINBI 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene64468 SustainPine v3.0 196
• AutoFact: Putative gag-pol polyprotein, identical [Solanum demissum] 7.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 8.846e-14
Putative C-terminus
sp_v3.0_unigene64498 SustainPine v3.0 245
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.123e-09
Putative Complete
sp_v3.0_unigene64777 SustainPine v3.0 150
• AutoFact: Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UUM9_ORYSJ 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 7.13e-10
Internal
sp_v3.0_unigene64836 SustainPine v3.0 216
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVL5_9POAL 7.0e-15
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00850; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.876e-29
Internal
sp_v3.0_unigene64850 SustainPine v3.0 132
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Sciadopitys verticillata RepID=Q56GF7_SCIVE 1.0e-10
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 8.872e-15
Internal
sp_v3.0_unigene65153 SustainPine v3.0 144
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 2.0e-10
• FL-Next: tr=Uncharacterized protein; Phytophthora ramorum (Sudden oak death agent). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene65253 SustainPine v3.0 93
• AutoFact: Putative polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SYE8_ARATH 1.0e-07
• FL-Next: tr=Putative polyprotein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Gag-Pol polyprotein 2.462e-14
Internal
sp_v3.0_unigene65282 SustainPine v3.0 301
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 2.0e-22
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.859e-26
Internal
sp_v3.0_unigene65330 SustainPine v3.0 295
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 4.0e-26
• FL-Next: tr=Integrase core domain containing protein; Asparagus officinalis (Garden asparagus). 0.0
• Sma3: Gag-Pol polyprotein 8.634e-13
Internal
sp_v3.0_unigene65995 SustainPine v3.0 264
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.101e-08
Putative Complete
sp_v3.0_unigene66214 SustainPine v3.0 372
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 6.0e-33
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.091e-32
Putative C-terminus
sp_v3.0_unigene66274 SustainPine v3.0 217
• AutoFact: H0515C11.9 protein n=1 Tax=Oryza sativa RepID=Q01MI2_ORYSA 3.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene66277 SustainPine v3.0 390
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 1.775e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain