Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retroviral aspartyl protease

Term: IPR013242  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene162829 SustainPine v3.0 392
• AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 5.0e-30
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Gag-Pol polyprotein 3.298e-14
Putative C-terminus
sp_v3.0_unigene162832 SustainPine v3.0 456
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVJ7_9POAL 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene162849 SustainPine v3.0 270
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: Os07g0195900 protein 8.772e-06
Internal
sp_v3.0_unigene162877 SustainPine v3.0 458
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD4_SILLA 7.0e-24
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.112e-07
Putative C-terminus
sp_v3.0_unigene162930 SustainPine v3.0 371
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=8 Tax=Oryza sativa RepID=Q2QR60_ORYSJ 6.0e-22
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.412e-08
Internal
sp_v3.0_unigene162997 SustainPine v3.0 274
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 9.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene163018 SustainPine v3.0 305
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene163039 SustainPine v3.0 420
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 1.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene163042 SustainPine v3.0 349
• AutoFact: Unassigned protein
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Sma3: Os12g0450200 protein 9.747e-06
Internal
sp_v3.0_unigene163066 SustainPine v3.0 259
• AutoFact: pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) 3.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
C-terminus
sp_v3.0_unigene163108 SustainPine v3.0 389
• AutoFact: PDR-type ABC transporter 9 [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Putative N-terminus
sp_v3.0_unigene163316 SustainPine v3.0 341
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene163374 SustainPine v3.0 416
• AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene163396 SustainPine v3.0 315
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative plant disease resistance polyprotein 9.084e-08
Putative N-terminus
sp_v3.0_unigene163412 SustainPine v3.0 200
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 2.0e-17
• FL-Next: tr=Putative retroelement protein; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene163444 SustainPine v3.0 275
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 2.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative N-terminus
sp_v3.0_unigene163519 SustainPine v3.0 278
• AutoFact: RVT_1 domain containing protein 5.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative C-terminus
sp_v3.0_unigene163546 SustainPine v3.0 173
• AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVG4_9POAL 9.0e-10
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Internal
sp_v3.0_unigene163680 SustainPine v3.0 451
• AutoFact: OSJNBa0059H15.7 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XXI2_ORYSJ 6.0e-30
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.451e-08
Putative Complete
sp_v3.0_unigene163714 SustainPine v3.0 408
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 5.0e-32
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Polyprotein 1.91e-07
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain