Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene168177 SustainPine v3.0 228
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75HH6_ORYSJ 4.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.14399e-43
Internal
sp_v3.0_unigene168180 SustainPine v3.0 272
• AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 6.0e-17
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene168224 SustainPine v3.0 262
• AutoFact: Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL 7.0e-37
• FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 1.14e-31
Internal
sp_v3.0_unigene168296 SustainPine v3.0 118
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Morus bombycis RepID=Q9AVM8_9ROSA 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Reverse transcriptase 1.4013e-45
Internal
sp_v3.0_unigene182941 SustainPine v3.0 307
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.805e-33
Internal
sp_v3.0_unigene183132 SustainPine v3.0 525
• AutoFact: RVT_2 domain containing protein 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene183219 SustainPine v3.0 541
• AutoFact: catalytic, putative (EC:2.4.1.224) 4.0e-11
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene183383 SustainPine v3.0 476
• AutoFact: Protein dimerization, putative n=1 Tax=Ricinus communis RepID=B9SWK8_RICCO 2.0e-24
• FL-Next: tr=Protein dimerization, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene183384 SustainPine v3.0 492
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.607e-15
Internal
sp_v3.0_unigene183452 SustainPine v3.0 597
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.833e-30
C-terminus
sp_v3.0_unigene183742 SustainPine v3.0 497
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3I0_ORYSJ 8.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene183838 SustainPine v3.0 560
• AutoFact: F5K24.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZPG3_ARATH 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 4.764e-06
Internal
sp_v3.0_unigene183950 SustainPine v3.0 1021
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QTQ7_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.609e-09
N-terminus
sp_v3.0_unigene184262 SustainPine v3.0 626
• AutoFact: Integrase n=2 Tax=Beta vulgaris RepID=A2I5F8_BETVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.667e-27
Putative C-terminus
sp_v3.0_unigene184567 SustainPine v3.0 689
• AutoFact: rve domain containing protein 7.0e-06
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene184753 SustainPine v3.0 501
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 2.608e-10
Putative C-terminus
sp_v3.0_unigene185087 SustainPine v3.0 795
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 6.499e-11
C-terminus
sp_v3.0_unigene185112 SustainPine v3.0 317
• AutoFact: Integrase (Fragment) n=1 Tax=Gossypium herbaceum RepID=Q7XYU4_GOSHE 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.085e-09
Internal
sp_v3.0_unigene185359 SustainPine v3.0 599
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.416e-08
Internal
sp_v3.0_unigene185368 SustainPine v3.0 470
• AutoFact: Exostosin-like [Medicago truncatula] gb|ABK28848.1| exostosin-like protein [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Catalytic, putative 1.205e-10
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain