Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165002 SustainPine v3.0 127
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 2.0e-11
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene165034 SustainPine v3.0 242
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-18
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.7236e-43
Internal
sp_v3.0_unigene165036 SustainPine v3.0 290
• AutoFact: Polyprotein n=1 Tax=Sorghum bicolor RepID=Q9XE68_SORBI 6.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene165130 SustainPine v3.0 228
• AutoFact: OSJNBa0035O13.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSL7_ORYSJ 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.657e-22
Putative N-terminus
sp_v3.0_unigene165180 SustainPine v3.0 268
• AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT family dimerisation domain containing protein 2.296e-07
Internal
sp_v3.0_unigene165224 SustainPine v3.0 210
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53JQ7_ORYSJ 2.0e-15
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.965e-23
Internal
sp_v3.0_unigene165242 SustainPine v3.0 343
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53NJ3_ORYSJ 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165308 SustainPine v3.0 442
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-31
• FL-Next: tr=Retrotransposon gag protein; Asparagus officinalis (Garden asparagus). 0.0
Internal
sp_v3.0_unigene165328 SustainPine v3.0 305
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 7.0e-18
• FL-Next: tr=Putative uncharacterized protein P0001A07.10; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.764e-06
Internal
sp_v3.0_unigene165406 SustainPine v3.0 470
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative gag-pol polyprotein 1.536e-13
Internal
sp_v3.0_unigene165474 SustainPine v3.0 342
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.628e-35
N-terminus
sp_v3.0_unigene165499 SustainPine v3.0 297
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 9.0e-26
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 8.126e-13
Putative C-terminus
sp_v3.0_unigene165514 SustainPine v3.0 344
• AutoFact: rve domain containing protein 4.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-Pol polyprotein 3.67e-09
Internal
sp_v3.0_unigene165515 SustainPine v3.0 489
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative gag-pol polyprotein 4.592e-07
N-terminus
sp_v3.0_unigene165584 SustainPine v3.0 349
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 5.0e-30
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Sma3: Pol protein integrase region 6.854e-25
Internal
sp_v3.0_unigene165611 SustainPine v3.0 397
• AutoFact: Putative retrovirus-related polyprotein (Fragment) n=1 Tax=Lithospermum erythrorhizon RepID=O65173_LITER 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165661 SustainPine v3.0 416
• AutoFact: Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE4_ARATH 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 3.001e-07
Internal
sp_v3.0_unigene165718 SustainPine v3.0 494
• AutoFact: Unassigned protein
• FL-Next: tr=Mutant gag-pol polyprotein; Pisum sativum (Garden pea). 0.0
Internal
sp_v3.0_unigene165765 SustainPine v3.0 368
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 1.0e-38
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.311e-32
Putative C-terminus
sp_v3.0_unigene165783 SustainPine v3.0 285
• AutoFact: Protein kinase [Medicago truncatula] 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative rust resistance kinase Lr10 4.383e-34
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain