Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene164458 SustainPine v3.0 312
• AutoFact: rve domain containing protein 8.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.261e-40
Putative Complete
sp_v3.0_unigene164475 SustainPine v3.0 175
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 5.79e-10
Internal
sp_v3.0_unigene164512 SustainPine v3.0 347
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5KQB0_ORYSJ 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: cDNA clone:001-115-E07, full insert sequence 7.797e-06
N-terminus
sp_v3.0_unigene164525 SustainPine v3.0 280
• AutoFact: Os10g0317000 protein n=2 Tax=Oryza sativa RepID=Q7XFZ5_ORYSJ 6.0e-28
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.823e-12
Putative N-terminus
sp_v3.0_unigene164546 SustainPine v3.0 225
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Reverse transcriptase 1.651e-15
Internal
sp_v3.0_unigene164548 SustainPine v3.0 218
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 7.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 1.892e-18
Putative C-terminus
sp_v3.0_unigene164601 SustainPine v3.0 422
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.087e-17
Putative C-terminus
sp_v3.0_unigene164613 SustainPine v3.0 401
• AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 5.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164641 SustainPine v3.0 207
• AutoFact: OSIGBa0111L12.7 protein n=1 Tax=Oryza sativa RepID=Q01IZ5_ORYSA 5.0e-16
• FL-Next: tr=OSIGBa0111L12.7 protein; Oryza sativa (Rice). 0.0
• Sma3: Polyprotein 8.129e-07
Internal
sp_v3.0_unigene164651 SustainPine v3.0 265
• AutoFact: Integrase (Fragment) n=5 Tax=Oryza RepID=Q9LL04_9ORYZ 4.0e-19
• FL-Next: tr=OO_Ba0005L10-OO_Ba0081K17.19 protein; Oryza officinalis. 0.0
• Sma3: Integrase 6.247e-31
Internal
sp_v3.0_unigene164685 SustainPine v3.0 179
• AutoFact: F20P5.25 protein n=1 Tax=Arabidopsis thaliana RepID=O04543_ARATH 4.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164717 SustainPine v3.0 391
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 1.328e-10
Internal
sp_v3.0_unigene164730 SustainPine v3.0 178
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Sciadopitys verticillata RepID=Q56GF7_SCIVE 3.0e-20
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene164779 SustainPine v3.0 229
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Putative retroelement 1.819e-08
Internal
sp_v3.0_unigene164796 SustainPine v3.0 387
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 2.0e-32
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.797e-06
Internal
sp_v3.0_unigene164797 SustainPine v3.0 338
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164819 SustainPine v3.0 276
• AutoFact: GK15001 n=1 Tax=Drosophila willistoni RepID=B4MVS9_DROWI 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164909 SustainPine v3.0 223
• AutoFact: Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ 1.0e-11
• FL-Next: tr=Putative uncharacterized protein Sb08g007560; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene164942 SustainPine v3.0 288
• AutoFact: rve domain containing protein 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164962 SustainPine v3.0 191
• AutoFact: CLL1B clavata1-like receptor S/T protein kinase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RER6_PHYPA 4.0e-13
• FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Receptor protein kinase CLAVATA1, putative 8.387e-19
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain