Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene49924 SustainPine v3.0 365
• AutoFact: OSJNBa0091D06.8 protein n=1 Tax=Oryza sativa RepID=Q7XU13_ORYSA 4.0e-28
• FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.12e-10
Internal
sp_v3.0_unigene50404 SustainPine v3.0 169
• AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene50421 SustainPine v3.0 133
• AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 7.0e-07
• FL-Next: tr=Putative retrotransposon polyprotein; Ipomoea batatas (Sweet potato) (Convolvulus batatas). 0.0
Internal
sp_v3.0_unigene50484 SustainPine v3.0 1143
• AutoFact: glycerol-3-phosphate acyltransferase 5 [Arabidopsis thaliana] sp|Q9CAY3.1|GPAT5_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 5; Short=AtGPAT5 gb|AAG51432.1|AC008153_5 unknown protein; 38446-40213 [Arabidopsis thaliana] dbj|BAC42290.1| unknown 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ER glycerol-phosphate acyltransferase 4.867e-22
C-terminus
sp_v3.0_unigene50669 SustainPine v3.0 752
• AutoFact: RVT_1 domain containing protein 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 5.49e-11
Putative Complete
sp_v3.0_unigene50872 SustainPine v3.0 246
• AutoFact: OSJNBa0087O24.13 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPJ7_ORYSJ 1.0e-15
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: OSJNBa0087O24.13 protein 7.31e-06
Internal
sp_v3.0_unigene51133 SustainPine v3.0 639
• AutoFact: Os08g0503200 protein n=2 Tax=Oryza sativa RepID=Q6ZFH9_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycerophosphoryl diester phosphodiesterase, putative 2.201e-07
Putative C-terminus
sp_v3.0_unigene51165 SustainPine v3.0 162
• AutoFact: Unassigned protein 7.0e-05
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene51270 SustainPine v3.0 546
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 8.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Gag-pol polyprotein, putative 2.505e-07
Internal
sp_v3.0_unigene51376 SustainPine v3.0 529
• AutoFact: Polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q94LA8_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.696e-20
Internal
sp_v3.0_unigene51554 SustainPine v3.0 193
• AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene51577 SustainPine v3.0 701
• AutoFact: RVT_1 domain containing protein 3.0e-10
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene51581 SustainPine v3.0 719
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 6.745e-11
Internal
sp_v3.0_unigene51652 SustainPine v3.0 464
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 9.0e-38
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.407e-34
C-terminus
sp_v3.0_unigene51662 SustainPine v3.0 447
• AutoFact: rve domain containing protein 3.0e-13
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.27518e-43
Internal
sp_v3.0_unigene51673 SustainPine v3.0 306
• AutoFact: Unassigned protein 3.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.471e-10
Internal
sp_v3.0_unigene51711 SustainPine v3.0 412
• AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.991e-35
Putative Complete
sp_v3.0_unigene51712 SustainPine v3.0 404
• AutoFact: Reverse transcriptase (Fragment) n=7 Tax=Prunus mume RepID=C8C9R0_PRUMU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Reverse transcriptase 1.43e-21
C-terminus
sp_v3.0_unigene51713 SustainPine v3.0 413
• AutoFact: RVT_1 domain containing protein 2.0e-20
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.4013e-45
Putative Complete
sp_v3.0_unigene51714 SustainPine v3.0 406
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=O82684_GINBI 1.0e-39
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 8.6e-17
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain