Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene46117 SustainPine v3.0 1319
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.154e-23
Putative Complete
sp_v3.0_unigene46139 SustainPine v3.0 351
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 6.0e-31
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.45e-25
Internal
sp_v3.0_unigene46643 SustainPine v3.0 375
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 3.0e-32
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Polyprotein 2.241e-20
Putative C-terminus
sp_v3.0_unigene46733 SustainPine v3.0 600
• AutoFact: RVT_1 domain containing protein 3.0e-19
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene46789 SustainPine v3.0 329
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata RepID=Q4JQ38_SCIVE 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.483e-34
Internal
sp_v3.0_unigene46855 SustainPine v3.0 688
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 0.0
Internal
sp_v3.0_unigene46861 SustainPine v3.0 357
• AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 9.0e-29
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Gag-Pol polyprotein 1.331e-12
Internal
sp_v3.0_unigene47323 SustainPine v3.0 231
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ45_CYCRE 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.057e-33
Internal
sp_v3.0_unigene47774 SustainPine v3.0 2475
• AutoFact: rve multi-domain protein 1.0e-11
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene47780 SustainPine v3.0 722
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.921e-17
Internal
sp_v3.0_unigene47881 SustainPine v3.0 402
• AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 5.0e-35
• FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene47915 SustainPine v3.0 1071
• AutoFact: FAD-linked oxidoreductase 1 n=1 Tax=Glycine max RepID=Q2PMD5_SOYBN 0.0
• FL-Next: sp=Reticuline oxidase; Eschscholzia californica (California poppy). 0.0
• Sma3: Reticuline oxidase, putative 9.251e-31
Putative C-terminus
sp_v3.0_unigene47966 SustainPine v3.0 848
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.2039e-45
N-terminus
sp_v3.0_unigene47997 SustainPine v3.0 404
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.086e-25
N-terminus
sp_v3.0_unigene48229 SustainPine v3.0 4333
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein 9.513e-09
Complete
sp_v3.0_unigene48546 SustainPine v3.0 388
• AutoFact: Beta-galactosidase 6 n=3 Tax=Arabidopsis RepID=BGAL6_ARATH 0.0
• FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-galactosidase 0.0
Internal
sp_v3.0_unigene48600 SustainPine v3.0 210
• AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr12 scaffold_18, whole genome shotgun sequence 1.561e-15
Internal
sp_v3.0_unigene49369 SustainPine v3.0 341
• AutoFact: RVT_1 domain containing protein 8.0e-05
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene49458 SustainPine v3.0 512
• AutoFact: Integrase (Fragment) n=1 Tax=Gossypium hirsutum RepID=Q7XYU1_GOSHI 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 5.766e-13
Putative Complete
sp_v3.0_unigene49513 SustainPine v3.0 4243
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.186e-15
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain