Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene44092 SustainPine v3.0 2913
• AutoFact: RecName: Full=Probable pleiotropic drug resistance protein 2 emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg|DAA00885.1| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Complete
sp_v3.0_unigene44122 SustainPine v3.0 533
• AutoFact: integrase [Gossypium hirsutum] 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene44320 SustainPine v3.0 555
• AutoFact: putative retrotransposon polyprotein [Ipomoea batatas] 8.99634e-43
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.617e-18
N-terminus
sp_v3.0_unigene44329 SustainPine v3.0 525
• AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 4.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.47e-11
Putative Complete
sp_v3.0_unigene44385 SustainPine v3.0 434
• AutoFact: RVT_1 domain containing protein 5.0e-09
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative N-terminus
sp_v3.0_unigene44671 SustainPine v3.0 406
• AutoFact: Gag-pol polyprotein n=3 Tax=Zea mays RepID=Q8L7J3_MAIZE 7.0e-29
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.555e-30
N-terminus
sp_v3.0_unigene44690 SustainPine v3.0 176
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Poaceae RepID=Q2QUR6_ORYSJ 2.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 1.4e-30
Internal
sp_v3.0_unigene44742 SustainPine v3.0 436
• AutoFact: Gag-pol polyprotein (Fragment) n=1 Tax=Pennisetum alopecuroides RepID=Q5D7H1_9POAL 6.0e-20
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene44745 SustainPine v3.0 230
• AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Internal
sp_v3.0_unigene45001 SustainPine v3.0 151
• AutoFact: Pleiotropic drug resistance protein 2 n=1 Tax=Nicotiana plumbaginifolia RepID=PDR2_NICPL 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Internal
sp_v3.0_unigene45110 SustainPine v3.0 1124
• AutoFact: putative leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] sp|Q9FII5.1|TDR_ARATH RecName: Full=Leucine-rich repeat receptor-like protein kinase TDR; AltName: Full=Protein PHLOEM INTERCALATED WITH XYLEM; AltName: Full=Tracheary elemen 0.0
• FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 2.272e-37
C-terminus
sp_v3.0_unigene45373 SustainPine v3.0 283
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.766e-21
Internal
sp_v3.0_unigene45798 SustainPine v3.0 267
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.641e-31
Internal
sp_v3.0_unigene45833 SustainPine v3.0 237
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene45897 SustainPine v3.0 1089
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.246e-14
Putative Complete
sp_v3.0_unigene45898 SustainPine v3.0 1536
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 7.98e-26
Putative Complete
sp_v3.0_unigene45906 SustainPine v3.0 3532
• AutoFact: pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene45907 SustainPine v3.0 868
• AutoFact: rve domain containing protein 1.0e-26
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene45908 SustainPine v3.0 492
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene45930 SustainPine v3.0 1032
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.156e-11
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain