Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene40946 SustainPine v3.0 328
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 3.0e-27
• FL-Next: tr=Putative gag-pol polyprotein, identical; Solanum demissum (Wild potato). 0.0
Internal
sp_v3.0_unigene41003 SustainPine v3.0 2588
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.424e-18
Putative C-terminus
sp_v3.0_unigene41074 SustainPine v3.0 248
• AutoFact: RVT_2 domain containing protein 7.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Reverse transcriptase 4.615e-19
Internal
sp_v3.0_unigene41094 SustainPine v3.0 358
• AutoFact: Verticillium wilt disease resistance protein n=1 Tax=Solanum torvum RepID=Q6JSK2_9SOLN 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ve resistance gene analog 3.103e-27
Internal
sp_v3.0_unigene41151 SustainPine v3.0 1608
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 5.447e-08
Putative Complete
sp_v3.0_unigene41194 SustainPine v3.0 371
• AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q0PY40_SOLLC 3.0e-24
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene41592 SustainPine v3.0 235
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Oryza sativa RepID=Q10GH3_ORYSJ 7.0e-23
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.965e-37
N-terminus
sp_v3.0_unigene42055 SustainPine v3.0 207
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene42152 SustainPine v3.0 141
• AutoFact: OSJNBa0053B21.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XKR0_ORYSJ 2.0e-10
• FL-Next: tr=OSJNBa0053B21.11 protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene42224 SustainPine v3.0 2781
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene42301 SustainPine v3.0 630
• AutoFact: rve domain containing protein 9.0e-24
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene42494 SustainPine v3.0 766
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Polyprotein 1.477e-24
Putative Complete
sp_v3.0_unigene42652 SustainPine v3.0 351
• AutoFact: Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.475e-19
Internal
sp_v3.0_unigene42985 SustainPine v3.0 1017
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUJ6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 3.334e-15
N-terminus
sp_v3.0_unigene43136 SustainPine v3.0 776
• AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 6.0e-26
• FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.085e-30
Internal
sp_v3.0_unigene43556 SustainPine v3.0 134
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.226e-12
Internal
sp_v3.0_unigene43615 SustainPine v3.0 176
• AutoFact: GK15001 gene product from transcript GK15001-RA 3.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene43667 SustainPine v3.0 223
• AutoFact: Integrase (Fragment) n=5 Tax=Oryza RepID=Q9LL04_9ORYZ 1.0e-14
• FL-Next: tr=Probable integrase-common tobacco-related; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Integrase 2.606e-17
Internal
sp_v3.0_unigene43759 SustainPine v3.0 1857
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene43797 SustainPine v3.0 149
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 8.0e-14
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.085e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain