Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene38799 SustainPine v3.0 337
• AutoFact: Flavenoid 3-hydroxylase (Fragment) n=9 Tax=Pseudotsuga RepID=C6F841_PSEMZ 8.40779e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Flavonoid 3'-hydroxylase 0.0
Internal
sp_v3.0_unigene38921 SustainPine v3.0 438
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.41917e-43
N-terminus
sp_v3.0_unigene38992 SustainPine v3.0 256
• AutoFact: Unassigned protein 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene39016 SustainPine v3.0 1311
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
C-terminus
sp_v3.0_unigene39017 SustainPine v3.0 614
• AutoFact: ATP-binding cassette transporter n=1 Tax=Selaginella moellendorffii RepID=D8RLA4_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
N-terminus
sp_v3.0_unigene39021 SustainPine v3.0 323
• AutoFact: Unassigned protein 3.0e-25
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
• Sma3: Copia-type polyprotein 1.989e-11
C-terminus
sp_v3.0_unigene39033 SustainPine v3.0 981
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Internal
sp_v3.0_unigene39494 SustainPine v3.0 513
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.661e-18
C-terminus
sp_v3.0_unigene39693 SustainPine v3.0 1615
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein 1.423e-12
C-terminus
sp_v3.0_unigene39772 SustainPine v3.0 143
• AutoFact: Retrotransposon like protein n=2 Tax=Arabidopsis thaliana RepID=O23588_ARATH 5.0e-10
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene39985 SustainPine v3.0 326
• AutoFact: Putative polyprotein (Fragment) n=1 Tax=Cicer arietinum RepID=Q949K9_CICAR 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.866e-10
Putative Complete
sp_v3.0_unigene40017 SustainPine v3.0 283
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.0e-23
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.234e-36
Internal
sp_v3.0_unigene40458 SustainPine v3.0 1988
• AutoFact: RecName: Full=Putative pleiotropic drug resistance protein 7 emb|CAD59570.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD24998.1| PDR-like ABC transporter [Oryza sativa Japonica Group] dbj|BAD25007.1| PDR-like ABC transporter [Oryza sati 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Putative N-terminus
sp_v3.0_unigene40461 SustainPine v3.0 650
• AutoFact: putative ABC transporter [Arabidopsis thaliana] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Internal
sp_v3.0_unigene40544 SustainPine v3.0 2340
• AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene40606 SustainPine v3.0 677
• AutoFact: rve domain containing protein 6.0e-09
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene40608 SustainPine v3.0 1303
• AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.93e-15
Putative Complete
sp_v3.0_unigene40639 SustainPine v3.0 205
• AutoFact: LRR_4 domain containing protein 2.0e-05
• Sma3: Putative leucine-rich repeat receptor-like kinase 4.612e-08
putative_coding
sp_v3.0_unigene40651 SustainPine v3.0 1097
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75KD0_ORYSJ 2.0e-22
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.817e-38
Putative N-terminus
sp_v3.0_unigene40943 SustainPine v3.0 564
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.658e-33
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain