Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene166042 SustainPine v3.0 351
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166089 SustainPine v3.0 371
• AutoFact: Chromo domain containing protein 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene166232 SustainPine v3.0 438
• AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 3.00018e-42
• FL-Next: tr=Activating signal cointegrator 1 complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene166295 SustainPine v3.0 345
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-26
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Sma3: Pol protein integrase region 1.46001e-41
Internal
sp_v3.0_unigene166312 SustainPine v3.0 333
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 5.983e-39
Internal
sp_v3.0_unigene166355 SustainPine v3.0 265
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 5.0e-14
• FL-Next: tr=Pol protein; Cucumis melo subsp. melo. 0.0
Internal
sp_v3.0_unigene166361 SustainPine v3.0 328
• AutoFact: ADP-ribosylation factor n=1 Tax=Grosmannia clavigera kw1407 RepID=F0XIE8_GROCL 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ADP-ribosylation factor 6.77e-27
N-terminus
sp_v3.0_unigene166387 SustainPine v3.0 451
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 1.953e-06
N-terminus
sp_v3.0_unigene166617 SustainPine v3.0 494
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 4.92e-11
C-terminus
sp_v3.0_unigene166626 SustainPine v3.0 193
• AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 2.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 7.858e-20
Putative C-terminus
sp_v3.0_unigene166715 SustainPine v3.0 308
• AutoFact: Dimer_Tnp_hAT domain containing protein 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT family dimerisation domain containing protein 4.717e-12
Internal
sp_v3.0_unigene166841 SustainPine v3.0 210
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSB7_RICCO 6.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Emb|CAB83315.1 4.755e-09
Putative C-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
• AutoFact: pfam01423, LSM, LSM domain 3.0e-13
• FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene166968 SustainPine v3.0 371
• AutoFact: putative MAP kinase kinase kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Map3k delta-1 protein kinase, putative 3.907e-25
Internal
sp_v3.0_unigene166997 SustainPine v3.0 261
• AutoFact: Telomerase reverse transcriptase catalytic subunit n=5 Tax=Doryanthes excelsa RepID=D5MD96_9ASPA 3.0e-27
• FL-Next: sp=Telomerase reverse transcriptase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Telomerase reverse transcriptase 2.982e-25
Internal
sp_v3.0_unigene167065 SustainPine v3.0 143
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Gossypium barbadense RepID=Q96421_GOSBA 1.0e-08
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 2.271e-36
Internal
sp_v3.0_unigene167162 SustainPine v3.0 291
• AutoFact: ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9SSW1_RICCO 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-binding cassette transporter, putative 0.0
Putative N-terminus
sp_v3.0_unigene167226 SustainPine v3.0 218
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 5.0e-17
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene167291 SustainPine v3.0 309
• AutoFact: polyamine oxidase [Nicotiana tabacum] 7.0e-31
• FL-Next: sp=Polyamine oxidase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Polyamine oxidase 1.87e-22
Internal
sp_v3.0_unigene167370 SustainPine v3.0 239
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.289e-40
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain