Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Gonadotropin, beta subunit, conserved site

Term: IPR018245  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene93862 SustainPine v3.0 1574
• AutoFact: 3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=D5AD26_PICSI 0.0
• FL-Next: sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyltransferase, putative 2.664e-28
Misassembled
sp_v3.0_unigene94379 SustainPine v3.0 1461
• AutoFact: 3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=D5AD26_PICSI 0.0
• FL-Next: sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyltransferase, putative 2.88667e-42
C-terminus
sp_v3.0_unigene94594 SustainPine v3.0 755
• AutoFact: Cellulose synthase-like D3, glycosyltransferase family 2 protein n=4 Tax=Physcomitrella patens RepID=A9SS17_PHYPA 0.0
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene95632 SustainPine v3.0 1690
• AutoFact: 3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=D5AD26_PICSI 0.0
• FL-Next: sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyltransferase, putative 1.69837e-42
Putative Complete
sp_v3.0_unigene97411 SustainPine v3.0 2261
• AutoFact: Cellulose synthase (Fragment) n=1 Tax=Pinus radiata RepID=Q4VWW6_PINRA 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
C-terminus
sp_v3.0_unigene99027 SustainPine v3.0 334
• AutoFact: Cellulose synthase n=13 Tax=core eudicotyledons RepID=B9IKV7_POPTR 1.0e-31
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 1.431e-30
N-terminus
sp_v3.0_unigene99083 SustainPine v3.0 287
• AutoFact: Cellulose synthase A catalytic subunit 3 [UDP-forming] n=4 Tax=Brassicaceae RepID=CESA3_ARATH 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene99589 SustainPine v3.0 1258
• AutoFact: Gibberellin-regulated protein 2, putative n=1 Tax=Ricinus communis RepID=B9SLF4_RICCO 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gibberellin-regulated protein 2 2.932e-24
Putative Complete
sp_v3.0_unigene99604 SustainPine v3.0 1183
• AutoFact: cellulose synthase-like protein CslE [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene100402 SustainPine v3.0 1185
• AutoFact: 3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=D5A9Z6_PICSI 0.0
• FL-Next: sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyltransferase, putative 1.098e-31
C-terminus
sp_v3.0_unigene102075 SustainPine v3.0 823
• AutoFact: cellulose synthase-like protein D4 [Populus tremuloides] 0.0
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cellulose synthase 1.34525e-43
Internal
sp_v3.0_unigene103201 SustainPine v3.0 1188
• AutoFact: Gibberellin-regulated protein 2, putative n=1 Tax=Ricinus communis RepID=B9SLF4_RICCO 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gibberellin-regulated protein 2 2.932e-24
Putative Complete
sp_v3.0_unigene105010 SustainPine v3.0 762
• AutoFact: origin recognition complex3 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene108998 SustainPine v3.0 472
• AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 6.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 7.204e-24
Internal
sp_v3.0_unigene109818 SustainPine v3.0 728
• AutoFact: gibberellin-regulated protein 2 [Arabidopsis thaliana] sp|P46688.1|GASA2_ARATH RecName: Full=Gibberellin-regulated protein 2; Flags: Precursor gb|AAB06309.1| GAST1 protein homolog [Arabidopsis thaliana] emb|CAB78084.1| gibberellin-regulated protein GASA2 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gibberellin-regulated protein 2 2.539e-16
Complete
sp_v3.0_unigene116215 SustainPine v3.0 493
• AutoFact: Cellulose synthase n=1 Tax=Medicago truncatula RepID=Q2HT12_MEDTR 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene116532 SustainPine v3.0 256
• AutoFact: Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR 5.0e-29
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene117440 SustainPine v3.0 614
• AutoFact: Cellulose synthase-like protein D4 n=2 Tax=Arabidopsis RepID=CSLD4_ARATH 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene122592 SustainPine v3.0 345
• AutoFact: cellulose synthase [Populus tremuloides] 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 0.0
Internal
sp_v3.0_unigene125929 SustainPine v3.0 288
• AutoFact: cellulose synthase-like protein D4 [Populus tremuloides] 6.02558e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cellulose synthase 1.463e-37
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain