Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase, 30-40kDa subunit, conserved site

Term: IPR001514  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4360 SustainPine v3.0 268
AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase II, third largest subunit 3.741e-09
Internal
sp_v3.0_unigene6490 SustainPine v3.0 1709
AutoFact: RNA polymerase I subunit 43 [Arabidopsis thaliana] gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana] gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed 2.096e-08
Complete
sp_v3.0_unigene15292 SustainPine v3.0 1673
AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene54653 SustainPine v3.0 343
AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase II, third largest subunit 1.764e-08
N-terminus
sp_v3.0_unigene56927 SustainPine v3.0 249
AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene68215 SustainPine v3.0 359
AutoFact: RNA polymerase I subunit 43 [Arabidopsis thaliana] gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana] gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidops 2.0e-15
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
C-terminus
sp_v3.0_unigene108304 SustainPine v3.0 389
AutoFact: DNA-directed RNA polymerase II, third largest subunit [Arabidopsis thaliana] 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase II, third largest subunit 3.392e-09
C-terminus
sp_v3.0_unigene155958 SustainPine v3.0 426
AutoFact: RNA polymerase II core subunit n=1 Tax=Dictyostelium purpureum RepID=F0ZT58_DICPU 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain