Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Cleavage/polyadenylation specificity factor, A subunit, C-terminal

Term: IPR004871  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene103179 SustainPine v3.0 329
• AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
• FL-Next: sp=DNA damage-binding protein 1b; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene108984 SustainPine v3.0 424
• AutoFact: cleavage and polyadenylation specificity factor subunit [Arabidopsis thaliana] 2.0e-28
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
Internal
sp_v3.0_unigene111022 SustainPine v3.0 234
• AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 1.0e-07
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene115664 SustainPine v3.0 128
• AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 3.0e-15
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene116506 SustainPine v3.0 366
• AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 6.0e-20
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene122167 SustainPine v3.0 440
• AutoFact: putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] 0.0
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 8.982e-10
Internal
sp_v3.0_unigene123926 SustainPine v3.0 302
• AutoFact: Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Arabidopsis RepID=CPSF1_ARATH 3.0e-30
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 1.248e-09
Internal
sp_v3.0_unigene133985 SustainPine v3.0 269
• AutoFact: RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb|CAD39979.2| OSJNBa0032B23.5 [Oryza sativa Japonica Group] 3.0e-16
• FL-Next: sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
C-terminus
sp_v3.0_unigene140323 SustainPine v3.0 381
• AutoFact: UV-damaged DNA binding factor - like protein [Arabidopsis thaliana] 1.0e-14
• FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene157975 SustainPine v3.0 556
• AutoFact: DNA damage-binding protein 1a n=5 Tax=Brassicaceae RepID=DDB1A_ARATH 0.0
• FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene165453 SustainPine v3.0 324
• AutoFact: DNA damage-binding protein 1 n=5 Tax=core eudicotyledons RepID=DDB1_SOLCE 7.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene184472 SustainPine v3.0 341
• AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain