Sustainpine_db
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Name: G-patch domain

Term: IPR000467  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene149627 SustainPine v3.0 267
• AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-06
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 45 2.9e-09
C-terminus
sp_v3.0_unigene155497 SustainPine v3.0 546
• AutoFact: D111/G-patch; Zinc finger, C2H2-type n=1 Tax=Medicago truncatula RepID=Q2HRQ8_MEDTR 5.0e-30
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: D111/G-patch 3.899e-06
Internal
sp_v3.0_unigene156502 SustainPine v3.0 414
• AutoFact: D111/G-patch domain-containing protein [Arabidopsis thaliana] ref|NP_850885.1| D111/G-patch domain-containing protein [Arabidopsis thaliana] ref|NP_001190403.1| D111/G-patch domain-containing protein [Arabidopsis thaliana] gb|ABG48425.1| At5g26610 [Arabid 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene157114 SustainPine v3.0 378
• AutoFact: Ferritin n=5 Tax=Hydra RepID=A0S5U1_HYDVU 1.0e-36
• FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene161052 SustainPine v3.0 424
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 2.0e-35
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase family protein 8.897e-07
C-terminus
sp_v3.0_unigene163378 SustainPine v3.0 335
• AutoFact: Unassigned protein
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene163823 SustainPine v3.0 327
• AutoFact: Retrotransposon protein, putative, unclassified n=4 Tax=Oryza sativa RepID=Q10I89_ORYSJ 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene167950 SustainPine v3.0 267
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 1.0e-23
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene184740 SustainPine v3.0 586
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE60_RICCO 4.0e-37
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene199189 SustainPine v3.0 579
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 6.243e-09
Putative Complete
sp_v3.0_unigene201124 SustainPine v3.0 298
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q7XFT0_ORYSJ 5.0e-24
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 0.0
Putative C-terminus
sp_v3.0_unigene205008 SustainPine v3.0 508
• AutoFact: Ferritin (Fragment) n=2 Tax=Branchiostoma RepID=Q86LZ3_BRALA 1.4013e-45
• FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ferritin 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain