Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: G-patch domain

Term: IPR000467  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene53320 SustainPine v3.0 482
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 1.0e-24
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene54421 SustainPine v3.0 235
AutoFact: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain [Arabidopsis thaliana] ref|NP_001078041.1| GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain [Arabidopsis thaliana] gb|AAD23716.1| hypothetic 5.0e-14
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Tuftelin interacting protein, putative 9.747e-06
Internal
sp_v3.0_unigene56936 SustainPine v3.0 410
AutoFact: Probable protein phosphatase 2C 15 n=3 Tax=Arabidopsis RepID=P2C15_ARATH 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein phosphatase, putative 2.81e-11
Internal
sp_v3.0_unigene58311 SustainPine v3.0 396
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene59957 SustainPine v3.0 171
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Integrase 2.357e-06
Internal
sp_v3.0_unigene62751 SustainPine v3.0 163
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q10SG2_ORYSJ 4.0e-12
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene63773 SustainPine v3.0 273
AutoFact: Pol (Fragment) n=1 Tax=Pisum sativum RepID=Q6WAY9_PEA 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene66072 SustainPine v3.0 478
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-24
FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene67360 SustainPine v3.0 329
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 7.0e-23
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene68075 SustainPine v3.0 301
AutoFact: RVT_1 domain containing protein 4.0e-08
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene69905 SustainPine v3.0 296
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 3.0e-22
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 8.513e-18
N-terminus
sp_v3.0_unigene70033 SustainPine v3.0 424
AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA48_ASPOF 6.0e-36
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.873e-10
N-terminus
sp_v3.0_unigene70273 SustainPine v3.0 266
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 7.0e-20
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene70988 SustainPine v3.0 187
AutoFact: Ferritin (Fragment) n=3 Tax=Pseudotsuga RepID=C6F952_PSEMZ 7.0e-21
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Internal
sp_v3.0_unigene71438 SustainPine v3.0 218
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 4.0e-18
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 1.426e-09
C-terminus
sp_v3.0_unigene74259 SustainPine v3.0 231
AutoFact: dynamin-like protein [Arabidopsis thaliana] 7.0e-13
FL-Next: Isoform 2 of Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B 0.0
Sma3: Dynamin, putative 3.179e-07
Internal
sp_v3.0_unigene74596 SustainPine v3.0 334
AutoFact: arginine/serine rich splicing factor sf4/14, putative; K13096 splicing factor 4 8.0e-27
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 4-like protein 1.696e-09
Internal
sp_v3.0_unigene76309 SustainPine v3.0 226
AutoFact: putative RNA-binding protein 10 [Oryza sativa Japonica Group] 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene76312 SustainPine v3.0 331
AutoFact: Ferritin n=1 Tax=Solanum tuberosum RepID=A7UGG8_SOLTU 1.0e-23
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Putative Complete
sp_v3.0_unigene78650 SustainPine v3.0 285
AutoFact: VpsA protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NHB0_COPC7 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dynamin, putative 1.848e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain