Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix motif

Term: IPR000445  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6159 SustainPine v3.0 1715
• AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: DNA repair protein RAD51 homolog 0.0
Complete
sp_v3.0_unigene7631 SustainPine v3.0 1779
• AutoFact: putative GTP-binding protein [Arabidopsis thaliana] emb|CAB87708.1| putative GTP-binding protein [Arabidopsis thaliana] gb|AAL25554.1| AT5g11480/F15N18_70 [Arabidopsis thaliana] gb|AAN28859.1| At5g11480/F15N18_70 [Arabidopsis thaliana] gb|AED91684.1| puta 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein engB, putative 2.668e-08
Complete
sp_v3.0_unigene7849 SustainPine v3.0 2132
• AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene7950 SustainPine v3.0 1112
• AutoFact: ubiquitin conjugating enzyme-like [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene8045 SustainPine v3.0 1694
• AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
• FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene12272 SustainPine v3.0 927
• AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 1.0e-36
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene13827 SustainPine v3.0 2894
• AutoFact: kinesin family member 22 [Arabidopsis thaliana] gb|AAX12877.1| At5g02370 [Arabidopsis thaliana] gb|AED90464.1| kinesin family member 22 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene16083 SustainPine v3.0 1189
• AutoFact: Ubiquitin carrier protein (Fragment) n=2 Tax=Magnoliophyta RepID=Q677E9_HYAOR 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 1.054e-16
Putative Complete
sp_v3.0_unigene23445 SustainPine v3.0 522
• AutoFact: Ubiquitin-conjugating enzyme E2-16 kDa n=48 Tax=Fungi/Metazoa group RepID=UBC1_MAGO7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 0.0
Complete
sp_v3.0_unigene24521 SustainPine v3.0 524
• AutoFact: PREDICTED: similar to DNA repair protein RAD51 homolog A n=1 Tax=Hydra magnipapillata RepID=UPI0001923F2B 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 6.709e-12
Internal
sp_v3.0_unigene26027 SustainPine v3.0 822
• AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 1.4013e-45
• FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene52128 SustainPine v3.0 215
• AutoFact: kinesin-like protein [Arabidopsis thaliana] 6.0e-17
• FL-Next: sp=Kinesin-1-like protein PSS1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene57981 SustainPine v3.0 407
• AutoFact: Ubiquitin carrier protein (Fragment) n=1 Tax=Vitis vinifera RepID=D7TND2_VITVI 8.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 5.69e-15
N-terminus
sp_v3.0_unigene67971 SustainPine v3.0 206
• AutoFact: DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO 2.0e-18
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Rad51 DNA recombinase 1 1.208e-08
Putative C-terminus
sp_v3.0_unigene68699 SustainPine v3.0 236
• AutoFact: Meiotic recombination protein DMC1 homolog n=1 Tax=Glycine max RepID=DMC1_SOYBN 3.0e-20
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 3.125e-12
C-terminus
sp_v3.0_unigene72796 SustainPine v3.0 156
• AutoFact: Ubiquitin carrier protein (Fragment) n=2 Tax=Magnoliophyta RepID=Q677E9_HYAOR 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 2.542e-19
Internal
sp_v3.0_unigene76940 SustainPine v3.0 140
• AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 7.0e-10
• FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene78356 SustainPine v3.0 208
• AutoFact: Ubiquitin carrier protein n=2 Tax=Pucciniales RepID=E3JRY6_PUCGT 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 3.762e-13
Putative Complete
sp_v3.0_unigene99949 SustainPine v3.0 877
• AutoFact: RAD51 homolog [Populus nigra] 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 7.576e-12
C-terminus
sp_v3.0_unigene101224 SustainPine v3.0 419
• AutoFact: Nuclear cap-binding protein subunit 2 n=2 Tax=Arabidopsis RepID=NCBP2_ARATH 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear cap-binding protein 4.509e-11
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain