Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene162121 SustainPine v3.0 210
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.0e-23
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.542e-10
Internal
sp_v3.0_unigene162621 SustainPine v3.0 290
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene162681 SustainPine v3.0 377
AutoFact: Unassigned protein 9.99995e-41
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.869e-15
Putative C-terminus
sp_v3.0_unigene162975 SustainPine v3.0 291
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.716e-22
Internal
sp_v3.0_unigene163414 SustainPine v3.0 284
AutoFact: Retrotransposon protein, putative, Ty1-copia sub-class n=3 Tax=Oryza sativa Japonica Group RepID=Q53ND1_ORYSJ 7.0e-28
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.197e-10
Internal
sp_v3.0_unigene164450 SustainPine v3.0 319
AutoFact: Seven trans-membrane protein n=1 Tax=Triticum aestivum RepID=E2RZR5_WHEAT 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mlo family protein 7.852e-33
Internal
sp_v3.0_unigene166091 SustainPine v3.0 365
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 7.0e-40
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene184508 SustainPine v3.0 507
AutoFact: PREDICTED: cap binding protein 20-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBB931 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.622e-11
N-terminus
sp_v3.0_unigene184621 SustainPine v3.0 454
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 5.0e-40
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.666e-08
C-terminus
sp_v3.0_unigene186503 SustainPine v3.0 432
AutoFact: Mitochondrial pyruvate dehydrogenase kinase isoform 1 n=6 Tax=Papilionoideae RepID=A8I354_PEA 6.0e-22
FL-Next: tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Pyruvate dehydrogenase kinase 1.287e-25
C-terminus
sp_v3.0_unigene189573 SustainPine v3.0 492
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 4.0e-30
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 1.242e-07
C-terminus
sp_v3.0_unigene193704 SustainPine v3.0 397
AutoFact: chloroplast srp54 receptor1 [Zea mays] emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays] gb|ACR34281.1| unknown [Zea mays] 8.0e-22
FL-Next: sp=Cell division protein FtsY homolog, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene194249 SustainPine v3.0 546
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 3.0e-22
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene195366 SustainPine v3.0 304
AutoFact: Protein argonaute 7 n=3 Tax=Oryza sativa RepID=AGO7_ORYSJ 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.402e-36
Internal
sp_v3.0_unigene198585 SustainPine v3.0 682
AutoFact: endonuclease [Arabidopsis thaliana] 6.0e-15
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene198848 SustainPine v3.0 415
AutoFact: Flap endonuclease 1-A n=1 Tax=Physcomitrella patens subsp. patens RepID=FEN11_PHYPA 2.00386e-43
FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene201160 SustainPine v3.0 424
AutoFact: Kinesin-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FME7_ARATH 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin-like protein 1.616e-30
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain