Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene119726 SustainPine v3.0 357
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 1.4013e-45
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Argonaute protein group 1.596e-36
Internal
sp_v3.0_unigene123041 SustainPine v3.0 518
AutoFact: endonuclease [Arabidopsis thaliana] 1.0e-15
FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene127218 SustainPine v3.0 1864
AutoFact: Argonaute protein group n=2 Tax=fabids RepID=B9N365_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.16e-36
N-terminus
sp_v3.0_unigene128084 SustainPine v3.0 953
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Pyruvate dehydrogenase kinase 8.548e-30
C-terminus
sp_v3.0_unigene130626 SustainPine v3.0 487
AutoFact: putative nucleotide repair protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene131903 SustainPine v3.0 354
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 2.0e-16
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Eukaryotic translation initiation factor 2c, putative 7.442e-11
Internal
sp_v3.0_unigene137502 SustainPine v3.0 289
AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 9.0e-24
FL-Next: sp=Flap endonuclease 1; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Flap endonuclease 1a 5.451e-09
Internal
sp_v3.0_unigene139948 SustainPine v3.0 338
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC 7.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.033e-11
Internal
sp_v3.0_unigene141611 SustainPine v3.0 246
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 5.034e-07
Internal
sp_v3.0_unigene141938 SustainPine v3.0 414
AutoFact: argonaute 1 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Argonaute protein group 1.666e-36
Internal
sp_v3.0_unigene144203 SustainPine v3.0 518
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.284e-31
Internal
sp_v3.0_unigene144637 SustainPine v3.0 395
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 8.165e-07
Internal
sp_v3.0_unigene148901 SustainPine v3.0 276
AutoFact: RVT_2 domain containing protein 7.0e-24
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 4.001e-07
Internal
sp_v3.0_unigene149923 SustainPine v3.0 115
AutoFact: DNA excision repair protein ERCC-1 [Arabidopsis thaliana] sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1; Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive 7 gb|AAF27027.1|AC009177_17 putative nucleotide repa 5.0e-09
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene151063 SustainPine v3.0 317
AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene154658 SustainPine v3.0 502
AutoFact: Flap endonuclease 1 n=3 Tax=Clupeocephala RepID=FEN1A_DANRE 0.0
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Flap endonuclease 1a 6.823e-09
Internal
sp_v3.0_unigene155701 SustainPine v3.0 390
AutoFact: Endonuclease III homolog n=1 Tax=Schizosaccharomyces pombe 972h- RepID=NTH1_SCHPO 1.0e-36
FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene156027 SustainPine v3.0 258
AutoFact: DNA repair protein RAD51 homolog 1 n=16 Tax=Amniota RepID=RAD51_MOUSE 1.0e-30
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 1.491e-11
Internal
sp_v3.0_unigene157049 SustainPine v3.0 418
AutoFact: PREDICTED: similar to RAD51 homolog isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180BB1E 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 7.079e-12
Internal
sp_v3.0_unigene159725 SustainPine v3.0 356
AutoFact: Unassigned protein 3.0e-19
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain