Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene70552 SustainPine v3.0 318
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 1.0e-27
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Argonaute protein group 2.609e-14
Internal
sp_v3.0_unigene74378 SustainPine v3.0 457
AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.661e-11
Internal
sp_v3.0_unigene74483 SustainPine v3.0 408
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 1.4013e-45
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.671e-14
Putative C-terminus
sp_v3.0_unigene76940 SustainPine v3.0 140
AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 7.0e-10
FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene77945 SustainPine v3.0 316
AutoFact: Mitochondrial pyruvate dehydrogenase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Y0_LACBS 2.00386e-43
FL-Next: tr=Mitochondrial pyruvate dehydrogenase kinase; Volvox carteri (Green alga). 0.0
Sma3: Mitochondrial pyruvate dehydrogenase kinase 4.49e-09
Internal
sp_v3.0_unigene78958 SustainPine v3.0 395
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
C-terminus
sp_v3.0_unigene95704 SustainPine v3.0 514
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Argonaute protein group 1.042e-13
Internal
sp_v3.0_unigene96237 SustainPine v3.0 654
AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.953e-18
Internal
sp_v3.0_unigene96713 SustainPine v3.0 503
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Argonaute protein group 2.675e-14
Internal
sp_v3.0_unigene97778 SustainPine v3.0 637
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Eukaryotic translation initiation factor 2c, putative 7.789e-08
Internal
sp_v3.0_unigene99949 SustainPine v3.0 877
AutoFact: RAD51 homolog [Populus nigra] 0.0
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 7.576e-12
C-terminus
sp_v3.0_unigene100637 SustainPine v3.0 343
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: 8-oxoguanine DNA glycosylase 4.703e-10
Internal
sp_v3.0_unigene100648 SustainPine v3.0 666
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Pyruvate dehydrogenase kinase 8.548e-30
C-terminus
sp_v3.0_unigene100684 SustainPine v3.0 227
AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: 8-oxoguanine DNA glycosylase 2.032e-09
Internal
sp_v3.0_unigene100913 SustainPine v3.0 367
AutoFact: 5'-3' exonuclease-like protein n=1 Tax=Arabidopsis thaliana RepID=F4J5Q0_ARATH 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene101224 SustainPine v3.0 419
AutoFact: Nuclear cap-binding protein subunit 2 n=2 Tax=Arabidopsis RepID=NCBP2_ARATH 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 4.509e-11
Internal
sp_v3.0_unigene101738 SustainPine v3.0 397
AutoFact: endonuclease III homologue [Oryza sativa Japonica Group] gb|AAX96333.1| endonuclease III homologue [Oryza sativa Japonica Group] gb|EEC67986.1| hypothetical protein OsI_35754 [Oryza sativa Indica Group] gb|EEE51951.1| hypothetical protein OsJ_33589 [Oryza 5.0e-16
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene102041 SustainPine v3.0 584
AutoFact: chloroplast srp54 receptor1 [Zea mays] emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays] gb|ACR34281.1| unknown [Zea mays] 3.0e-34
FL-Next: sp=Cell division protein FtsY homolog, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene105898 SustainPine v3.0 373
AutoFact: Hcr2-0B n=1 Tax=Solanum lycopersicum RepID=Q9ZTJ9_SOLLC 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene115143 SustainPine v3.0 337
AutoFact: endonuclease [Arabidopsis thaliana] 6.0e-23
FL-Next: sp=Crossover junction endonuclease MUS81; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain