Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene57379 SustainPine v3.0 360
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 2.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.309e-12
Internal
sp_v3.0_unigene58337 SustainPine v3.0 350
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 4.0e-37
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.535e-21
Putative C-terminus
sp_v3.0_unigene59304 SustainPine v3.0 184
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 3.0e-12
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 8.992e-07
Internal
sp_v3.0_unigene59721 SustainPine v3.0 475
AutoFact: DNA polymerase I n=3 Tax=Andropogoneae RepID=B4FJZ1_MAIZE 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene62678 SustainPine v3.0 180
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 9.556e-07
Internal
sp_v3.0_unigene63858 SustainPine v3.0 262
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 7.0e-15
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.711e-09
Internal
sp_v3.0_unigene64775 SustainPine v3.0 215
AutoFact: Cell division protein ftsy, putative n=1 Tax=Ricinus communis RepID=B9RDL9_RICCO 4.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene65074 SustainPine v3.0 227
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene66571 SustainPine v3.0 341
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.0e-35
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.094e-16
Internal
sp_v3.0_unigene66598 SustainPine v3.0 380
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 2.0e-38
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 4.565e-07
Internal
sp_v3.0_unigene67014 SustainPine v3.0 310
AutoFact: Unassigned protein 4.0e-22
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene67971 SustainPine v3.0 206
AutoFact: DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO 2.0e-18
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Rad51 DNA recombinase 1 1.208e-08
Putative C-terminus
sp_v3.0_unigene68401 SustainPine v3.0 163
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene68699 SustainPine v3.0 236
AutoFact: Meiotic recombination protein DMC1 homolog n=1 Tax=Glycine max RepID=DMC1_SOYBN 3.0e-20
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 3.125e-12
C-terminus
sp_v3.0_unigene68742 SustainPine v3.0 257
AutoFact: Unassigned protein 5.0e-21
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.33e-12
Internal
sp_v3.0_unigene68787 SustainPine v3.0 287
AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 1.0e-30
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.449e-11
Internal
sp_v3.0_unigene69361 SustainPine v3.0 310
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.582e-09
Internal
sp_v3.0_unigene70096 SustainPine v3.0 199
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 3.0e-14
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene70249 SustainPine v3.0 459
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Gag-Pol polyprotein 2.609e-07
Putative C-terminus
sp_v3.0_unigene70293 SustainPine v3.0 412
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 8.0e-38
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.175e-14
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain