Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene19666 SustainPine v3.0 435
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.651e-16
Internal
sp_v3.0_unigene22080 SustainPine v3.0 293
• AutoFact: barley mlo defense gene homolog6 [Zea mays] gb|AAK38342.1| seven transmembrane protein Mlo6 [Zea mays] gb|ACN27049.1| unknown [Zea mays] 4.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein MLO, putative 1.776e-20
Internal
sp_v3.0_unigene23674 SustainPine v3.0 1105
• AutoFact: DNA binding protein [Arabidopsis thaliana] gb|AAG51077.1|AC069472_17 unknown protein; 19524-20560 [Arabidopsis thaliana] gb|AAM64678.1| unknown [Arabidopsis thaliana] gb|AEE75167.1| DNA binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene24249 SustainPine v3.0 685
• AutoFact: Cell division protein ftsy, putative n=1 Tax=Ricinus communis RepID=B9RDL9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene24521 SustainPine v3.0 524
• AutoFact: PREDICTED: similar to DNA repair protein RAD51 homolog A n=1 Tax=Hydra magnipapillata RepID=UPI0001923F2B 0.0
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 6.709e-12
Internal
sp_v3.0_unigene26027 SustainPine v3.0 822
• AutoFact: Endonuclease III, putative n=1 Tax=Ricinus communis RepID=B9T798_RICCO 1.4013e-45
• FL-Next: tr=Endonuclease III, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene35200 SustainPine v3.0 1656
• AutoFact: HhH-GPD base excision DNA repair protein-related-like [Oryza sativa Japonica Group] dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa Japonica Group] gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Grou 0.0
• FL-Next: sp=Protein ROS1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene38724 SustainPine v3.0 2148
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.7e-24
C-terminus
sp_v3.0_unigene38725 SustainPine v3.0 496
• AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.496e-16
Internal
sp_v3.0_unigene39508 SustainPine v3.0 1708
• AutoFact: endonuclease [Arabidopsis thaliana] 0.0
• FL-Next: sp=Crossover junction endonuclease MUS81; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene43797 SustainPine v3.0 149
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 8.0e-14
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.085e-09
Internal
sp_v3.0_unigene45737 SustainPine v3.0 188
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.973e-10
Internal
sp_v3.0_unigene47517 SustainPine v3.0 916
• AutoFact: Similar to gb|U96710 8-oxoguanine DNA-glycosylase from Homo sapiens [Arabidopsis thaliana] 3.0e-37
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: 8-oxoguanine DNA glycosylase 2.643e-09
C-terminus
sp_v3.0_unigene47701 SustainPine v3.0 665
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-Pol polyprotein 8.708e-08
C-terminus
sp_v3.0_unigene49765 SustainPine v3.0 287
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 1.0e-26
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-Pol polyprotein 1.273e-07
Putative C-terminus
sp_v3.0_unigene51673 SustainPine v3.0 306
• AutoFact: Unassigned protein 3.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.471e-10
Internal
sp_v3.0_unigene52128 SustainPine v3.0 215
• AutoFact: kinesin-like protein [Arabidopsis thaliana] 6.0e-17
• FL-Next: sp=Kinesin-1-like protein PSS1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene52420 SustainPine v3.0 439
• AutoFact: Mitochondrial pyruvate dehydrogenase kinase isoform 1 n=6 Tax=Papilionoideae RepID=A8I354_PEA 0.0
• FL-Next: tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Pyruvate dehydrogenase kinase 8.548e-30
Putative C-terminus
sp_v3.0_unigene53155 SustainPine v3.0 224
• AutoFact: 8-oxoguanine DNA glycosylase [Populus nigra] 6.0e-19
• FL-Next: tr=N-glycosylase/DNA lyase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene56724 SustainPine v3.0 436
• AutoFact: RVT_2 domain containing protein 4.0e-10
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.623e-11
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain