Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma-70 factor

Term: IPR000943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1887 SustainPine v3.0 2829
AutoFact: DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA 0.0
FL-Next: sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: DNA polymerase 1.099e-23
C-terminus
sp_v3.0_unigene5980 SustainPine v3.0 2229
AutoFact: Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=E1C9M6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9582 SustainPine v3.0 2223
AutoFact: RNA polymerase sigma factor [Arabidopsis thaliana] emb|CAA77213.1| sigma-like factor [Arabidopsis thaliana] dbj|BAA78109.1| RNA polymerase sigma subunit SigE [Arabidopsis thaliana] dbj|BAB11572.1| sigma-like factor [Arabidopsis thaliana] dbj|BAH19595.1| A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene12697 SustainPine v3.0 956
AutoFact: sigma factor [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastid RNA polymerase sigma factor 2.532e-11
Internal
sp_v3.0_unigene22621 SustainPine v3.0 938
AutoFact: sigma factorB [Arabidopsis thaliana] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Sigma factor 2.447e-08
C-terminus
sp_v3.0_unigene23861 SustainPine v3.0 567
AutoFact: putative DNA polymerase epsilon catalytic subunit protein isoform b [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA polymerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: DNA polymerase 1.854e-29
C-terminus
sp_v3.0_unigene34975 SustainPine v3.0 758
AutoFact: RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7K1V2_CYAP8 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Sigma factor 2 2.424e-08
Putative C-terminus
sp_v3.0_unigene44125 SustainPine v3.0 290
AutoFact: DNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SN27_VITVI 1.0e-34
FL-Next: sp=DNA polymerase; Vitis vinifera (Grape). 0.0
Sma3: DNA polymerase 8.296e-21
Internal
sp_v3.0_unigene46288 SustainPine v3.0 300
AutoFact: DNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8RS33_SELML 3.0e-40
FL-Next: sp=DNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: DNA polymerase 5.481e-29
Internal
sp_v3.0_unigene46884 SustainPine v3.0 117
AutoFact: DNA polymerase n=1 Tax=Arabidopsis thaliana RepID=Q9SGD5_ARATH 1.0e-14
FL-Next: sp=DNA polymerase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA polymerase 4.748e-35
Internal
sp_v3.0_unigene48829 SustainPine v3.0 213
AutoFact: DNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SJG5_SELML 1.0e-18
FL-Next: sp=DNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: DNA polymerase 1.32e-23
Internal
sp_v3.0_unigene53261 SustainPine v3.0 331
AutoFact: DNA polymerase n=1 Tax=Ricinus communis RepID=B9SSU6_RICCO 0.0
FL-Next: sp=DNA polymerase; Ricinus communis (Castor bean). 0.0
Sma3: DNA polymerase 4.748e-35
Internal
sp_v3.0_unigene62114 SustainPine v3.0 134
AutoFact: DNA polymerase n=1 Tax=Arabidopsis thaliana RepID=Q9SGD5_ARATH 4.0e-16
FL-Next: sp=DNA polymerase; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: DNA polymerase 3.605e-32
Internal
sp_v3.0_unigene64144 SustainPine v3.0 283
AutoFact: DNA polymerase n=1 Tax=Ricinus communis RepID=B9SSU6_RICCO 3.0e-28
FL-Next: sp=DNA polymerase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: DNA polymerase 1.099e-23
Internal
sp_v3.0_unigene66976 SustainPine v3.0 245
AutoFact: DNA polymerase n=1 Tax=Populus trichocarpa RepID=B9MYH6_POPTR 9.0e-29
FL-Next: sp=DNA polymerase; subsp. trichocarpa). 0.0
Sma3: DNA polymerase 2.672e-35
Internal
sp_v3.0_unigene68941 SustainPine v3.0 211
AutoFact: DNA polymerase n=4 Tax=Arabidopsis RepID=Q9ZVC8_ARATH 6.0e-11
FL-Next: sp=DNA polymerase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: DNA polymerase 1.579e-23
Internal
sp_v3.0_unigene105611 SustainPine v3.0 529
AutoFact: Plastid RNA polymerase sigma-subunit n=7 Tax=Arabidopsis RepID=O22057_ARATH 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene106574 SustainPine v3.0 443
AutoFact: DNA polymerase n=2 Tax=Oryza sativa RepID=Q6K777_ORYSJ 0.0
FL-Next: sp=DNA polymerase; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Sma3: DNA polymerase 4.748e-35
Internal
sp_v3.0_unigene111126 SustainPine v3.0 327
AutoFact: DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA 8.00001e-42
FL-Next: sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: DNA polymerase 2.079e-26
Internal
sp_v3.0_unigene135583 SustainPine v3.0 478
AutoFact: DNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SXI7_PHYPA 2.0e-34
FL-Next: sp=DNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: DNA polymerase 7.927e-21
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain