Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene18062 SustainPine v3.0 670
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18884 SustainPine v3.0 536
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene21388 SustainPine v3.0 990
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 8.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene21462 SustainPine v3.0 857
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene21925 SustainPine v3.0 3064
• AutoFact: putative pre-mRNA splicing factor [Oryza sativa Japonica Group] gb|AAP54456.1| U5 snRNP-associated 102 kDa protein, putative, expressed [Oryza sativa Japonica Group] gb|EAY79087.1| hypothetical protein OsI_34194 [Oryza sativa Indica Group] 0.0
• FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene26754 SustainPine v3.0 1194
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.327e-08
Putative Complete
sp_v3.0_unigene34250 SustainPine v3.0 756
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 2.922e-08
C-terminus
sp_v3.0_unigene34290 SustainPine v3.0 2948
• AutoFact: Hepatocellular carcinoma-associated antigen, putative n=1 Tax=Ricinus communis RepID=B9RXI9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene34369 SustainPine v3.0 598
• AutoFact: transcription-coupled DNA repair protein-related; K12867 pre-mRNA-splicing factor SYF1 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene34868 SustainPine v3.0 1570
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.122e-08
Putative Complete
sp_v3.0_unigene35274 SustainPine v3.0 326
• AutoFact: Unassigned protein
• FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Internal
sp_v3.0_unigene37491 SustainPine v3.0 525
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene37802 SustainPine v3.0 3560
• AutoFact: Pre-mRNA-processing protein prp39, putative n=1 Tax=Ricinus communis RepID=B9SKM7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA-processing protein prp39, putative 3.168e-09
Complete
sp_v3.0_unigene40998 SustainPine v3.0 260
• AutoFact: DUF1740 domain containing protein 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: Similarity to unknown protein 2.608e-06
Internal
sp_v3.0_unigene41302 SustainPine v3.0 337
• AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene42693 SustainPine v3.0 642
• AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 0.0
• FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene43302 SustainPine v3.0 363
• AutoFact: DUF1740 domain containing protein 1.0e-26
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Sma3: Similarity to unknown protein 3.211e-06
Internal
sp_v3.0_unigene46988 SustainPine v3.0 2040
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.069e-08
Putative Complete
sp_v3.0_unigene49192 SustainPine v3.0 273
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene55839 SustainPine v3.0 214
• AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain